Publications by authors named "Can Cenik"

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Topological and functional characterization of human translation efficiency covariation network.
Kangsheng Qi, Can Cenik

Bioinformatics· November 2025

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Developmental and transcriptional programs that define the initiation of the forelimb.
Vighnesh Ghatpande, Alecxander J Lewis, Kathryn E Windsor, Hyunji Lee, Aaron J Alcala, Can Cenik

bioRxiv· November 2025

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Translon: a single term for translated regions.
Michał I Świrski, Jack A S Tierney, M Mar Albà, Dmitry E Andreev, Julie L Aspden, Can Cenik

Nat Methods· October 2025

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A late cytoplasmic surveillance pathway ensures ribosome integrity.
Ruta Chitale, Kaoling Guan, Shilpa Rao, Caroline Wang, Can Cenik

bioRxiv· October 2025

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Cycloheximide resistant ribosomes reveal adaptive translation dynamics in C. elegans.
Qiuxia Zhao, Blythe Bolton, Reed Rothe, Reiko Tachibana, Can Cenik, Elif Sarinay Cenik

Genetics· September 2025

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A programmed decline in ribosome levels governs human early neurodevelopment.
Chunyang Ni, Yudong Wei, Barbara Vona, Dayea Park, Yulei Wei, Can Cenik

Nat Cell Biol· August 2025

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Ribo-ITP expands the translatome of limited input samples.
Vighnesh Ghatpande, Uma Paul, MacKenzie A Howard, Can Cenik

bioRxiv· August 2025

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Predicting the translation efficiency of messenger RNA in mammalian cells.
Dinghai Zheng, Logan Persyn, Jun Wang, Yue Liu, Fernando Ulloa-Montoya, Can Cenik

Nat Biotechnol· July 2025

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Translation efficiency covariation identifies conserved coordination patterns across cell types.
Yue Liu, Shilpa Rao, Ian Hoskins, Michael Geng, Qiuxia Zhao, Elif Sarinay Cenik, Can Cenik

Nat Biotechnol· July 2025

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Landscape and regulation of mRNA translation in the early C. elegans embryo.
Yash Shukla, Vighnesh Ghatpande, Cindy F Hu, Daniel J Dickinson, Can Cenik

Cell Rep· June 2025

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Translation efficiency covariation across cell types is a conserved organizing principle of mammalian transcriptomes.
Yue Liu, Shilpa Rao, Ian Hoskins, Michael Geng, Qiuxia Zhao, Elif Sarinay Cenik, Can Cenik

bioRxiv· May 2025

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Ribo-ITP: A Method for Ribosome Profiling in Single Cells and Low-Input Samples.
Shilpa Rao, Tori Tonn, Can Cenik

Methods Mol Biol· May 2025

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Cycloheximide resistant ribosomes reveal adaptive translation dynamics in .
Qiuxia Zhao, Blythe Bolton, Reed Rothe, Reiko Tachibana, Can Cenik, Elif Sarinay Cenik

bioRxiv· May 2025

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Translational buffering tunes gene expression in mouse and human.
Shilpa Rao, Aden Y Le, Logan Persyn, Can Cenik

bioRxiv· May 2025

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Long-read RNA sequencing reveals allele-specific -methyladenosine modifications.
Dayea Park, Can Cenik

Genome Res· April 2025

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Landscape and regulation of mRNA translation in the early embryo.
Yash Shukla, Vighnesh Ghatpande, Cindy F Hu, Daniel J Dickinson, Can Cenik

bioRxiv· April 2025

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Differential impacts of ribosomal protein haploinsufficiency on mitochondrial function.
Agustian Surya, Blythe Marie Bolton, Reed Rothe, Raquel Mejia-Trujillo, Amanda Leonita, Can Cenik, Elif Sarinay Cenik

J Cell Biol· March 2025

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The assembly factor Reh1 is released from the ribosome during its initial round of translation.
Sharmishtha Musalgaonkar, James N Yelland, Ruta Chitale, Shilpa Rao, Hakan Ozadam, Can Cenik

Nat Commun· February 2025

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Predicting the translation efficiency of messenger RNA in mammalian cells.
Dinghai Zheng, Logan Persyn, Jun Wang, Yue Liu, Fernando Ulloa Montoya, Can Cenik

bioRxiv· January 2025

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Long-read RNA sequencing reveals allele-specific N-methyladenosine modifications.
Dayea Park, Can Cenik

bioRxiv· September 2024

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RiboGraph: an interactive visualization system for ribosome profiling data at read length resolution.
Jonathan Chacko, Hakan Ozadam, Can Cenik

Bioinformatics· June 2024

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Integrated multiplexed assays of variant effect reveal determinants of catechol-O-methyltransferase gene expression.
Ian Hoskins, Shilpa Rao, Charisma Tante, Can Cenik

Mol Syst Biol· May 2024

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Cytosolic Ribosomal Protein Haploinsufficiency affects Mitochondrial Morphology and Respiration.
Agustian Surya, Blythe Marie Bolton, Reed Rothe, Raquel Mejia-Trujillo, Qiuxia Zhao, Can Cenik, Elif Sarinay Cenik

bioRxiv· May 2024

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Cellular targets and lysine selectivity of the HERC5 ISG15 ligase.
Xu Zhao, Jessica M Perez, Peter A Faull, Catherine Chan, Femke W Munting, Can Cenik

iScience· February 2024

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An inappropriate decline in ribosome levels drives a diverse set of neurodevelopmental disorders.
Chunyang Ni, Leqian Yu, Barbara Vona, Dayea Park, Yulei Wei, Can Cenik

bioRxiv· January 2024

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