Publications by authors named "Carsen Stringer"

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F
Functional MRI signals as fast as 1Hz are coupled to brain states and predict spontaneous neural activity.
Leandro P L Jacob, Sydney M Bailes, Carsen Stringer, Jonathan R Polimeni, Laura D Lewis

bioRxiv· October 2025

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Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans.
Leandro P L Jacob, Sydney M Bailes, Stephanie D Williams, Carsen Stringer, Laura D Lewis

PLoS Comput Biol· September 2025

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Spatial transcriptomics reveals human cortical layer and area specification.
Xuyu Qian, Kyle Coleman, Shunzhou Jiang, Andrea J Kriz, Jack H Marciano, Carsen Stringer

Nature· August 2025

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Unsupervised pretraining in biological neural networks.
Lin Zhong, Scott Baptista, Rachel Gattoni, Jon Arnold, Daniel Flickinger, Carsen Stringer

Nature· August 2025

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B
Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans.
Leandro P L Jacob, Sydney M Bailes, Stephanie D Williams, Carsen Stringer, Laura D Lewis

bioRxiv· July 2025

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A simplified minimodel of visual cortical neurons.
Fengtong Du, Miguel Angel Núñez-Ochoa, Marius Pachitariu, Carsen Stringer

Nat Commun· July 2025

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Learning produces an orthogonalized state machine in the hippocampus.
Weinan Sun, Johan Winnubst, Maanasa Natrajan, Chongxi Lai, Koichiro Kajikawa, Carsen Stringer

Nature· April 2025

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Deep-tissue transcriptomics and subcellular imaging at high spatial resolution.
Valentina Gandin, Jun Kim, Liang-Zhong Yang, Yumin Lian, Takashi Kawase, Carsen Stringer

Science· April 2025

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Cellpose3: one-click image restoration for improved cellular segmentation.
Carsen Stringer, Marius Pachitariu

Nat Methods· March 2025

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R
Rastermap: a discovery method for neural population recordings.
Carsen Stringer, Lin Zhong, Atika Syeda, Fengtong Du, Maria Kesa

Nat Neurosci· January 2025

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A
Analysis methods for large-scale neuronal recordings.
Carsen Stringer, Marius Pachitariu

Science· November 2024

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A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging.
Helen Farrants, Yichun Shuai, William C Lemon, Christian Monroy Hernandez, Deng Zhang, Carsen Stringer

Nat Methods· October 2024

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Spatial Single-cell Analysis Decodes Cortical Layer and Area Specification.
Xuyu Qian, Kyle Coleman, Shunzhou Jiang, Andrea J Kriz, Jack H Marciano, Carsen Stringer

bioRxiv· June 2024

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S
Spike sorting with Kilosort4.
Marius Pachitariu, Shashwat Sridhar, Jacob Pennington, Carsen Stringer

Nat Methods· May 2024

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F
Facemap: a framework for modeling neural activity based on orofacial tracking.
Atika Syeda, Lin Zhong, Renee Tung, Will Long, Marius Pachitariu, Carsen Stringer

Nat Neurosci· January 2024

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V
Vagal sensory neurons mediate the Bezold-Jarisch reflex and induce syncope.
Jonathan W Lovelace, Jingrui Ma, Saurabh Yadav, Karishma Chhabria, Hanbing Shen, Carsen Stringer

Nature· November 2023

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A
A modular chemigenetic calcium indicator enables in vivo functional imaging with near-infrared light.
Helen Farrants, Yichun Shuai, William C Lemon, Christian Monroy Hernandez, Shang Yang, Carsen Stringer

bioRxiv· July 2023

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E
Editorial: Deciphering population neuronal dynamics: from theories to experiments.
Hongdian Yang, Woodrow L Shew, Shan Yu, Artur Luczak, Carsen Stringer

Front Syst Neurosci· April 2023

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C
Cellpose 2.0: how to train your own model.
Marius Pachitariu, Carsen Stringer

Nat Methods· December 2022

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O
Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation.
Kevin J Cutler, Carsen Stringer, Teresa W Lo, Luca Rappez, Nicholas Stroustrup

Nat Methods· November 2022

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N
Not so spontaneous: Multi-dimensional representations of behaviors and context in sensory areas.
Lilach Avitan, Carsen Stringer

Neuron· October 2022

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T
The Importance of Accounting for Movement When Relating Neuronal Activity to Sensory and Cognitive Processes.
Edward Zagha, Jeffrey C Erlich, Soohyun Lee, Gyorgy Lur, Daniel H O'Connor, Carsen Stringer

J Neurosci· February 2022

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H
High-precision coding in visual cortex.
Carsen Stringer, Michalis Michaelos, Dmitri Tsyboulski, Sarah E Lindo, Marius Pachitariu

Cell· May 2021

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C
Cellpose: a generalist algorithm for cellular segmentation.
Carsen Stringer, Tim Wang, Michalis Michaelos, Marius Pachitariu

Nat Methods· January 2021

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H
High-dimensional geometry of population responses in visual cortex.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Matteo Carandini, Kenneth D Harris

Nature· July 2019

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