Publications by authors named "Casey Hubert"

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Predicting hydrocarbon presence in marine cold seep sediments using machine learning models trained with benthic bacterial 16S rRNA taxonomy.
Rohan Khan, Tulika Bhardwaj, Carmen Li, Anirban Chakraborty, José M Seoane, Casey R J Hubert

Microbiol Spectr· October 2025

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Performance and suitability of wastewater based-surveillance for SARS-CoV-2 RNA in public schools.
Nicole Acosta, Alex Buchner Beaudet, Paul Westlund, Kevin Frankowski, Jia Hu, Casey R J Hubert

Sci Rep· October 2025

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Metagenomic analysis after selective culture enrichment of hospital and community wastewater enhances antimicrobial resistance gene detection.
Nicole Acosta, Jangwoo Lee, Maria A Bautista, Srijak Bhatnagar, Carmen Li, Casey R J Hubert

mBio· September 2025

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Consistent trends from different methods for monitoring SARS-CoV-2 in urban wastewater during a 29-month longitudinal study.
Janine McCalder, Jangwoo Lee, Judy Qiu, Qiaozhi Li, Linnet Immaraj, Casey R J Hubert

Front Microbiol· June 2025

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Polymer biodegradation by promotes reservoir souring during hydraulic fracturing.
Gabrielle Scheffer, Anirban Chakraborty, Kaela K Amundson, Rohan Khan, Michael J Wilkins, Casey R J Hubert

Appl Environ Microbiol· May 2025

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Nitrate-reducing microorganisms prevent souring of an oil field produced water storage pond.
Gabrielle Scheffer, Jayne Rattray, Paul Evans, Wei Shi, Srijak Bhatnagar, Casey R J Hubert

FEMS Microbiol Ecol· April 2025

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Enhanced crude oil degradation observed in sea ice following bioaugmentation with arctic bacteria.
Diana Saltymakova, Durell S Desmond, Alastair F Smith, María A Bautista, Eric Collins, Casey Hubert

Mar Environ Res· February 2025

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Longitudinal monitoring of sewershed resistomes in socioeconomically diverse urban neighborhoods.
Jangwoo Lee, Kevin Xiang, Emily Au, Shahrzad Sarabi, Nicole Acosta, Casey R J Hubert

Commun Med (Lond)· January 2025

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Hydrocarbon-degrading microbial populations in permanently cold deep-sea sediments in the NW Atlantic.
Oyeboade Adebayo, Srijak Bhatnagar, Jamie Webb, Calvin Campbell, Martin Fowler, Casey R J Hubert

Mar Pollut Bull· November 2024

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Early warning COVID-19 outbreak in long-term care facilities using wastewater surveillance: correlation, prediction, and interaction with clinical and serological statuses.
Xiaoli Pang, Bonita E Lee, Tiejun Gao, Rhonda J Rosychuk, Linnet Immaraj, Casey R J Hubert

Lancet Microbe· October 2024

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Novel oil-associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes.
Francisco D Davila Aleman, María A Bautista, Janine McCalder, Kaiden Jobin, Sean M C Murphy, Casey R J Hubert

Environ Microbiol· October 2024

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Reply to Jautzy et al.: Considerations on methane equilibrium-do not forget to add the pepper.
Anirban Chowdhury, Gregory T Ventura, Yaisa Owino, Ellen J Lalk, Natasha MacAdam, Casey R J Hubert

Proc Natl Acad Sci U S A· September 2024

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Wastewater-based surveillance as a tool for public health action: SARS-CoV-2 and beyond.
Michael D Parkins, Bonita E Lee, Nicole Acosta, Maria Bautista, Casey R J Hubert

Clin Microbiol Rev· March 2024

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A Bayesian framework for modeling COVID-19 case numbers through longitudinal monitoring of SARS-CoV-2 RNA in wastewater.
Xiaotian Dai, Nicole Acosta, Xuewen Lu, Casey R J Hubert, Jangwoo Lee

Stat Med· March 2024

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Cold seep formation from salt diapir-controlled deep biosphere oases.
Anirban Chowdhury, Gregory T Ventura, Yaisa Owino, Ellen J Lalk, Natasha MacAdam, Casey R J Hubert

Proc Natl Acad Sci U S A· March 2024

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Denitrification genotypes of endospore-forming .
Emma Bell, Jianwei Chen, William D L Richardson, Milovan Fustic, Casey R J Hubert

ISME Commun· January 2024

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Wastewater surveillance monitoring of SARS-CoV-2 variants of concern and dynamics of transmission and community burden of COVID-19.
Maria E Hasing, Bonita E Lee, Tiejun Gao, Qiaozhi Li, Yuanyuan Qiu, Casey R J Hubert

Emerg Microbes Infect· December 2023

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Wastewater-based surveillance can be used to model COVID-19-associated workforce absenteeism.
Nicole Acosta, Xiaotian Dai, Maria A Bautista, Barbara J Waddell, Jangwoo Lee, Casey R J Hubert

Sci Total Environ· November 2023

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Potential for natural attenuation of crude oil hydrocarbons in benthic microbiomes near coastal communities in Kivalliq, Nunavut, Canada.
Meng Ji, Alastair F Smith, Jayne E Rattray, Whitney E England, Casey R J Hubert

Mar Pollut Bull· November 2023

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Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species.
Yongyi Peng, Zijian Lu, Donald Pan, Ling-Dong Shi, Zhao Zhao, Casey R J Hubert

ISME J· October 2023

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Campus node-based wastewater surveillance enables COVID-19 case localization and confirms lower SARS-CoV-2 burden relative to the surrounding community.
Jangwoo Lee, Nicole Acosta, Barbara J Waddell, Kristine Du, Kevin Xiang, Casey R J Hubert

Water Res· October 2023

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Multi-year seabed environmental baseline in deep-sea offshore oil prospective areas established using microbial biodiversity.
Deidra K Ferguson, Carmen Li, Anirban Chakraborty, Daniel A Gittins, Martin Fowler, Casey R J Hubert

Mar Pollut Bull· September 2023

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SituSeq: an offline protocol for rapid and remote Nanopore 16S rRNA amplicon sequence analysis.
Jackie Zorz, Carmen Li, Anirban Chakraborty, Daniel A Gittins, Taylor Surcon, Casey R J Hubert

ISME Commun· April 2023

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Realizing the value in "non-standard" parts of the qPCR standard curve by integrating fundamentals of quantitative microbiology.
Philip J Schmidt, Nicole Acosta, Alex H S Chik, Patrick M D'Aoust, Robert Delatolla, Casey R J Hubert

Front Microbiol· March 2023

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Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps.
Xiyang Dong, Yongyi Peng, Muhua Wang, Laura Woods, Wenxue Wu, Casey R J Hubert

Nat Commun· February 2023

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