Publications by authors named "Casey Ta"

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Scalable scientific interest profiling using large language models.
Yilun Liang, Gongbo Zhang, Edward Sun, Betina Idnay, Yilu Fang, Casey Ta

J Biomed Inform· December 2025

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A method for characterizing disease progression from acute kidney injury to chronic kidney disease.
Yilu Fang, Jordan G Nestor, Casey N Ta, Jerard Z Kneifati-Hayek, Chunhua Weng

J Biomed Inform· December 2025

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Implementing integrated genomic risk assessments for breast cancer: lessons learned from the Electronic Medical Records and Genomics study.
Cong Liu, Katherine D Crew, Jennifer Morse, Jodell E Linder, Antonis C Antoniou, Casey N Ta, Nita Limdi

JAMIA Open· October 2025

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Achieving a rapid and continuous learning health system requires socio-technical harmonization of research and operational IT.
Cong Liu, Casey N Ta, Elisabeth S DiMaria, Rachel C Shelton, Karthik Natarajan, Soumitra Sengupta

Npj Health Syst· August 2025

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Scalable Scientific Interest Profiling Using Large Language Models.
Yilun Liang, Gongbo Zhang, Edward Sun, Betina Idnay, Yilu Fang, Casey Ta

ArXiv· August 2025

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Announcing the Biomedical Data Translator: Initial Public Release.
Karamarie Fecho, Gwênlyn Glusman, Sergio E Baranzini, Chris Bizon, Matthew Brush, Casey Ta

Clin Transl Sci· July 2025

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Identifying Phenotypes for Earlier Diagnosis of Rare Diseases.
Casey N Ta, Cong Liu, Chunhua Weng

Stud Health Technol Inform· May 2025

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Implementing Integrated Genomic Risk Assessments for Breast Cancer: Lessons Learned from the eMERGE Study.
Cong Liu, Katherine Crew, Jennifer Morse, Jodell E Linder, Antonis C Antoniou, Casey N Ta, Nita Limdi

medRxiv· May 2025

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Current Limitations of Electronic Health Record Systems in Supporting Pragmatic Clinical Trials: Insights from the eMERGE Consortium.
Kavishwar B Wagholikar, Jennifer Allen Pacheco, Adam S Gordon, Atlas Khan, Bahram Namjou Khales, Casey Ta, Nita Limdi

medRxiv· April 2025

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Mini-mental status examination phenotyping for Alzheimer's disease patients using both structured and narrative electronic health record features.
Betina Idnay, Gongbo Zhang, Fangyi Chen, Casey N Ta, Matthew W Schelke

J Am Med Inform Assoc· January 2025

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Phenotype driven molecular genetic test recommendation for diagnosing pediatric rare disorders.
Fangyi Chen, Priyanka Ahimaz, Quan M Nguyen, Rachel Lewis, Wendy K Chung, Casey N Ta

NPJ Digit Med· November 2024

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Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation.
Kayla Schiffer-Kane, Cong Liu, Tiffany J Callahan, Casey Ta, Jordan G Nestor

J Biomed Inform· July 2024

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Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation.
Jimyung Park, Yilu Fang, Casey Ta, Gongbo Zhang, Betina Idnay

J Biomed Inform· June 2024

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Applying unsupervised machine learning approaches to characterize autologous breast reconstruction patient subgroups: an NSQIP analysis of 14,274 patients.
Dylan K Kim, George S Corpuz, Casey N Ta, Chunhua Weng, Christine H Rohde

J Plast Reconstr Aesthet Surg· January 2024

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Phenotype-Driven Molecular Genetic Test Recommendation for Diagnosing Pediatric Rare Disorders.
Fangyi Chen, Priyanka Ahimaz, Kai Wang, Wendy K Chung, Casey Ta

Res Sq· November 2023

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Uncovering key clinical trial features influencing recruitment.
Betina Idnay, Yilu Fang, Alex Butler, Joyce Moran, Ziran Li, Casey Ta, Edward Stanley

J Clin Transl Sci· September 2023

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An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges.
Karamarie Fecho, Chris Bizon, Tursynay Issabekova, Sierra Moxon, Anne E Thessen, Casey Ta

J Clin Transl Sci· September 2023

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A data-driven approach to optimizing clinical study eligibility criteria.
Yilu Fang, Hao Liu, Betina Idnay, Casey Ta, Karen Marder

J Biomed Inform· June 2023

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Can Race-sensitive Biomedical Embeddings Improve Healthcare Predictive Models?
Hao Liu, Nour Moustafa-Fahmy, Casey Ta, Chunhua Weng

AMIA Jt Summits Transl Sci Proc· June 2023

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Principal Investigators' Perceptions on Factors Associated with Successful Recruitment in Clinical Trials.
Betina Idnay, Alex Butler, Yilu Fang, Ziran Li, Junghwan Lee, Casey Ta

AMIA Jt Summits Transl Sci Proc· June 2023

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EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension.
Tian Kang, Yingcheng Sun, Jae Hyun Kim, Casey Ta, Adler Perotte, Nour Moustafa-Fahmy

J Am Med Inform Assoc· May 2023

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Clinical and temporal characterization of COVID-19 subgroups using patient vector embeddings of electronic health records.
Casey N Ta, Jason E Zucker, Po-Hsiang Chiu, Yilu Fang, Karthik Natarajan

J Am Med Inform Assoc· January 2023

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OARD: Open annotations for rare diseases and their phenotypes based on real-world data.
Cong Liu, Casey N Ta, Jim M Havrilla, Jordan G Nestor, Matthew E Spotnitz

Am J Hum Genet· September 2022

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Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort Identification.
Cong Liu, Hao Liu, Casey Ta, James Roger, Alex Butler

Stud Health Technol Inform· June 2022

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Towards Better Diagnosis Prediction Using Bidirectional Recurrent Neural Networks.
Junghwan Lee, Cong Liu, Casey Ta, Chunhua Weng

Stud Health Technol Inform· June 2022

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