Publications by authors named "Chamith Fonseka"

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Automated clustering reveals CD4 T cell subset imbalances in rheumatoid arthritis.
Ben Mulhearn, Lysette Marshall, Megan Sutcliffe, Susan K Hannes, Chamith Fonseka

Front Immunol· May 2023

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Maximizing statistical power to detect differentially abundant cell states with scPOST.
Nghia Millard, Ilya Korsunsky, Kathryn Weinand, Chamith Y Fonseka, Aparna Nathan

Cell Rep Methods· November 2021

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Multimodal single-cell approaches shed light on T cell heterogeneity.
Aparna Nathan, Yuriy Baglaenko, Chamith Y Fonseka, Jessica I Beynor, Soumya Raychaudhuri

Curr Opin Immunol· December 2019

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PD-1hiCXCR5- T peripheral helper cells promote B cell responses in lupus via MAF and IL-21.
Alexandra V Bocharnikov, Joshua Keegan, Vanessa S Wacleche, Ye Cao, Chamith Y Fonseka

JCI Insight· October 2019

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Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry.
Fan Zhang, Kevin Wei, Kamil Slowikowski, Chamith Y Fonseka, Deepak A Rao

Nat Immunol· July 2019

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Mixed-effects association of single cells identifies an expanded effector CD4 T cell subset in rheumatoid arthritis.
Chamith Y Fonseka, Deepak A Rao, Nikola C Teslovich, Ilya Korsunsky, Susan K Hannes

Sci Transl Med· October 2018

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Leveraging blood and tissue CD4+ T cell heterogeneity at the single cell level to identify mechanisms of disease in rheumatoid arthritis.
Chamith Y Fonseka, Deepak A Rao, Soumya Raychaudhuri

Curr Opin Immunol· December 2017

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Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis.
Deepak A Rao, Michael F Gurish, Jennifer L Marshall, Kamil Slowikowski, Chamith Y Fonseka

Nature· February 2017

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Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes.
Brian J Beliveau, Alistair N Boettiger, Maier S Avendaño, Ralf Jungmann, Ruth B McCole, Chamith Y Fonseka

Nat Commun· May 2015

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Abnormal dosage of ultraconserved elements is highly disfavored in healthy cells but not cancer cells.
Ruth B McCole, Chamith Y Fonseka, Amnon Koren, C-Ting Wu

PLoS Genet· October 2014

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Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.
Brian J Beliveau, Eric F Joyce, Nicholas Apostolopoulos, Feyza Yilmaz, Chamith Y Fonseka

Proc Natl Acad Sci U S A· December 2012

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