Publications by authors named "Chantal Scheepbouwer"

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The pan-cancer proteome atlas, a mass spectrometry-based landscape for discovering tumor biology, biomarkers, and therapeutic targets.
Jaco C Knol, Mengge Lyu, Franziska Böttger, Madalena Nunes Monteiro, Thang V Pham, Chantal Scheepbouwer

Cancer Cell· July 2025

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Full-length tRNAs lacking a functional CCA tail are selectively sorted into the lumen of extracellular vesicles.
Chantal Scheepbouwer, Ernesto Aparicio-Puerta, Cristina Gómez-Martin, Monique A J van Eijndhoven, Esther E E Drees

bioRxiv· May 2024

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IsoSeek for unbiased and UMI-informed sequencing of miRNAs from low input samples at single-nucleotide resolution.
Monique A J van Eijndhoven, Chantal Scheepbouwer, Ernesto Aparicio-Puerta, Michael Hackenberg, D Michiel Pegtel

STAR Protoc· December 2023

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NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods.
Chantal Scheepbouwer, Michael Hackenberg, Monique A J van Eijndhoven, Alan Gerber, Michiel Pegtel

Nucleic Acids Res· July 2023

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ALL-tRNAseq enables robust tRNA profiling in tissue samples.
Chantal Scheepbouwer, Ernesto Aparicio-Puerta, Cristina Gomez-Martin, Heleen Verschueren, Monique van Eijndhoven

Genes Dev· March 2023

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sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.
Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer

Nucleic Acids Res· July 2022

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DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery.
Tiansheng Zhu, Yi Zhu, Yue Xuan, Huanhuan Gao, Xue Cai, Chantal Scheepbouwer

Genomics Proteomics Bioinformatics· April 2020

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Vesicle-bound EBV-BART13-3p miRNA in circulation distinguishes nasopharyngeal from other head and neck cancer and asymptomatic EBV-infections.
Octavia Ramayanti, Sandra A W M Verkuijlen, Putri Novianti, Chantal Scheepbouwer, Branislav Misovic

Int J Cancer· May 2019

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A Multimodal Imaging Approach for Longitudinal Evaluation of Bladder Tumor Development in an Orthotopic Murine Model.
Chantal Scheepbouwer, Sandra Meyer, Maroeska J Burggraaf, Jithin Jose, Carla F M Molthoff

PLoS One· August 2017

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