Publications by authors named "Chaohan Xu"

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RNAPaceDB: a dedicated database to dissect RNA velocity across diverse cell types.
Hui Liu, Honghan Zhou, Siru Yang, Weicheng Ma, Jun Wang, Chaohan Xu

Nucleic Acids Res· October 2025

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Discovery and validation of a 10-gene predictive signature for response to adjuvant chemotherapy in stage II and III colon cancer.
Chaohan Xu, Peng Xia, Jie Li, Keeli B Lewis, Kristen K Ciombor

Cell Rep Med· August 2024

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ncStem: a comprehensive resource of curated and predicted ncRNAs in cancer stemness.
Hui Liu, Nan Zhang, Yijie Jia, Jun Wang, Aokun Ye, Chaohan Xu

Database (Oxford)· August 2024

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Differential whole-genome doubling based signatures for improvement on clinical outcomes and drug response in patients with breast cancer.
Yingli Lv, Guotao Feng, Lei Yang, Xiaoliang Wu, Chengyi Wang, Chaohan Xu

Heliyon· April 2024

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Establishment of comorbidity target pools and prediction of drugs candidate for multiple sclerosis and autoimmune thyroid diseases based on GWAS and transcriptome data.
Xin Wang, Yifei Wang, Xuemei Zhang, Xiangxiang Hong, Xinming Rang, Chaohan Xu

Mult Scler Relat Disord· October 2023

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Intermediate complex morphophysiological dormancy in seeds of Aconitum barbatum (Ranunculaceae).
Lei Zhang, Chaohan Xu, Huina Liu, Qingqing Wu, Jun Tao

BMC Plant Biol· July 2023

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Single-cell RNA sequencing identifies critical transcription factors of tumor cell invasion induced by hypoxia microenvironment in glioblastoma.
Yanru Zhang, Bo Zhang, Chengqian Lv, Nan Zhang, Kaiyuan Xing, Zixuan Wang, Chaohan Xu

Theranostics· July 2023

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Systemically Identifying Triple-Negative Breast Cancer Subtype-Specific Prognosis Signatures, Based on Single-Cell RNA-Seq Data.
Kaiyuan Xing, Bo Zhang, Zixuan Wang, Yanru Zhang, Tengyue Chai, Xuexue Qin, Chaohan Xu

Cells· January 2023

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Immune cells transcriptome-based drug repositioning for multiple sclerosis.
Xinyue Yin, Xinming Rang, Xiangxiang Hong, Yinglian Zhou, Chaohan Xu

Front Immunol· November 2022

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Identification of Prognostic Gene Signatures by Developing a scRNA-Seq-Based Integration Approach to Predict Recurrence and Chemotherapy Benefit in Stage II-III Colorectal Cancer.
Zixuan Wang, Kaiyuan Xing, Bo Zhang, Yanru Zhang, Tengyue Chai, Xuexue Qin, Chaohan Xu

Int J Mol Sci· October 2022

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Identification of potential key genes and immune infiltration in Multiple sclerosis.
Yang Liu, Yinglian Zhou, Hui Yue, Haitong Dou, Xinming Rang, Chaohan Xu

Mult Scler Relat Disord· April 2022

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Identification of multiple sclerosis-related genes regulated by EBV-encoded microRNAs in B cells.
Xinming Rang, Yuan Liu, Jingguo Wang, Yifei Wang, Chaohan Xu

Mult Scler Relat Disord· March 2022

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Identification of common susceptibility genes and drug target genes in multiple sclerosis, systemic lupus erythematosus, and rheumatoid arthritis and its value to guide clinical treatment.
Yang Liu, Xinming Rang, Xiaowei Zou, Xin Wang, Xuemei Zhang, Chaohan Xu

Mult Scler Relat Disord· February 2022

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A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data.
Ruizhi Xiang, Wencan Wang, Lei Yang, Shiyuan Wang, Chaohan Xu

Front Genet· March 2021

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Systematical identification of cell-specificity of CTCF-gene binding based on epigenetic modifications.
Jie Wu, Li Zhang, Qian Song, Lei Yu, Shuyuan Wang, Chaohan Xu

Brief Bioinform· January 2021

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Revealing the subtyping of non-small cell lung cancer based on genomic evolutionary patterns by multi-region sequencing.
Gaoming Liao, Xin Liang, Yanyan Ping, Yong Zhang, Jianlong Liao, Chaohan Xu

Cancer Med· December 2020

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Dissecting the Functional Mechanisms of Somatic Copy-Number Alterations Based on Dysregulated ceRNA Networks across Cancers.
Yanyan Ping, Yao Zhou, Jing Hu, Lin Pang, Chaohan Xu

Mol Ther Nucleic Acids· September 2020

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Identification and functional analysis of specific MS risk miRNAs and their target genes.
Deling Luo, Jingguo Wang, Xuemei Zhang, Xinming Rang, Chaohan Xu

Mult Scler Relat Disord· June 2020

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Dissecting the mA methylation affection on afatinib resistance in non-small cell lung cancer.
Qianqian Meng, Shuyuan Wang, Shunheng Zhou, Haizhou Liu, Xueyan Ma, Xu Zhou, Chaohan Xu

Pharmacogenomics J· April 2020

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Context-Specific Coordinately Regulatory Network Prioritize Breast Cancer Genetic Risk Factors.
Shuyuan Wang, Wencan Wang, Weida Wang, Peng Xia, Lei Yu, Chaohan Xu

Front Genet· March 2020

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Prioritizing Gene Cascading Paths to Model Colorectal Cancer Through Engineered Organoids.
Yanyan Ping, Chaohan Xu, Liwen Xu, Gaoming Liao, Yao Zhou

Front Bioeng Biotechnol· February 2020

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Identification of Dysregulated Competitive Endogenous RNA Networks Driven by Copy Number Variations in Malignant Gliomas.
Jinyuan Xu, Xiaobo Hou, Lin Pang, Shangqin Sun, Shengyuan He, Linfu Xu, Chaohan Xu

Front Genet· October 2019

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Identification of a Combined RNA Prognostic Signature in Adenocarcinoma of the Lung.
Si-Yu He, Wen-Jing Xi, Xin Wang, Chao-Han Xu, Liang Cheng

Med Sci Monit· May 2019

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Systematical Identification of Breast Cancer-Related Circular RNA Modules for Deciphering circRNA Functions Based on the Non-Negative Matrix Factorization Algorithm.
Shuyuan Wang, Peng Xia, Li Zhang, Lei Yu, Hui Liu, Chaohan Xu

Int J Mol Sci· February 2019

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Inference of patient-specific subpathway activities reveals a functional signature associated with the prognosis of patients with breast cancer.
Junwei Han, Siyao Liu, Ying Jiang, Chaohan Xu, Baotong Zheng

J Cell Mol Med· September 2018

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