Publications by authors named "Chaok Seok"

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Editorial overview: Artificial intelligence methodologies in structural biology.
Chaok Seok, Pratyush Tiwary

Curr Opin Struct Biol· December 2025

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T-SCAPE: T cell immunogenicity scoring via cross-domain aided predictive engine.
Jeonghyeon Kim, Nuri Jung, Jayyoon Lee, Nam-Hyuk Cho, Jinsung Noh, Chaok Seok

Sci Adv· December 2025

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SHARP: Generating Synthesizable Molecules via Fragment-Based Hierarchical Action-Space Reinforcement Learning for Pareto Optimization.
Jeonghyeon Kim, Seongok Ryu, Woohyeong Lee, Ansoo Lee, Hahnbeom Park, Chaok Seok

J Chem Inf Model· November 2025

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Artificial intelligence in therapeutic antibody design: Advances and future prospects.
Sujin Park, Wooyeop Jeong, Yubeen Kim, Chang-Han Lee, Chaok Seok

Curr Opin Struct Biol· October 2025

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Deep learning molecular interaction motifs from receptor structures alone.
Seeun Kim, Simaek Oh, Hyeonuk Woo, Jiho Sim, Chaok Seok

J Cheminform· July 2025

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Structural insights into small-molecule agonist recognition and activation of complement receptor C3aR.
Jinuk Kim, Saebom Ko, Chulwon Choi, Jungnam Bae, Hyeonsung Byeon, Chaok Seok

EMBO J· May 2025

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Physics-Inspired Accuracy Estimator for Model-Docked Ligand Complexes.
Byung-Hyun Bae, Jungyoon Choi, Chaok Seok, Hahnbeom Park

J Chem Theory Comput· February 2025

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Discovery of highly active kynureninases for cancer immunotherapy through protein language model.
Hyunuk Eom, Sukhwan Park, Kye Soo Cho, Jihyeon Lee, Hyunbin Kim, Chaok Seok

Nucleic Acids Res· January 2025

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CSearch: chemical space search via virtual synthesis and global optimization.
Hakjean Kim, Seongok Ryu, Nuri Jung, Jinsol Yang, Chaok Seok

J Cheminform· December 2024

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GalaxySagittarius-AF: Predicting Targets for Drug-Like Compounds in the Extended Human 3D Proteome.
Sohee Kwon, Nuri Jung, Jinsol Yang, Chaok Seok

J Mol Biol· September 2024

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GalaxyDock-DL: Protein-Ligand Docking by Global Optimization and Neural Network Energy.
Changsoo Lee, Jonghun Won, Seongok Ryu, Jinsol Yang, Nuri Jung, Chaok Seok

J Chem Theory Comput· August 2024

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Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling.
Hyeonuk Woo, Yubeen Kim, Chaok Seok

PLoS Comput Biol· June 2024

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Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family.
Chulwon Choi, Jungnam Bae, Seonghan Kim, Seho Lee, Hyunook Kang, Chaok Seok

Nat Commun· December 2023

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ECPAS/Ecm29-mediated 26S proteasome disassembly is an adaptive response to glucose starvation.
Won Hoon Choi, Yejin Yun, Insuk Byun, Sumin Kim, Seho Lee, Chaok Seok

Cell Rep· July 2023

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Atomic-level thermodynamics analysis of the binding free energy of SARS-CoV-2 neutralizing antibodies.
Jihyeon Lee, Chaok Seok, Sihyun Ham, Song-Ho Chong

Proteins· May 2023

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GalaxyDock2-HEME: Protein-ligand docking for heme proteins.
Changsoo Lee, Jinsol Yang, Sohee Kwon, Chaok Seok

J Comput Chem· May 2023

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Benchmarking applicability of medium-resolution cryo-EM protein structures for structure-based drug design.
Seho Lee, Chaok Seok, Hahnbeom Park

J Comput Chem· May 2023

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Ebastine impairs metastatic spread in triple-negative breast cancer by targeting focal adhesion kinase.
Juyeon Seo, Minsu Park, Dongmi Ko, Seongjae Kim, Jung Min Park, Chaok Seok

Cell Mol Life Sci· April 2023

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HProteome-BSite: predicted binding sites and ligands in human 3D proteome.
Jiho Sim, Sohee Kwon, Chaok Seok

Nucleic Acids Res· January 2023

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Structural basis for Y2 receptor-mediated neuropeptide Y and peptide YY signaling.
Hyunook Kang, Chaehee Park, Yeol Kyo Choi, Jungnam Bae, Sohee Kwon, Chaok Seok

Structure· January 2023

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Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction.
Sumin Lee, Seeun Kim, Gyu Rie Lee, Sohee Kwon, Hyeonuk Woo, Chaok Seok

Comput Struct Biotechnol J· December 2022

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CSAlign and CSAlign-Dock: Structure alignment of ligands considering full flexibility and application to protein-ligand docking.
Sohee Kwon, Chaok Seok

Comput Struct Biotechnol J· November 2022

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GalaxyWater-CNN: Prediction of Water Positions on the Protein Structure by a 3D-Convolutional Neural Network.
Sangwoo Park, Chaok Seok

J Chem Inf Model· July 2022

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GalaxyDomDock: An Ab Initio Domain-domain Docking Web Server for Multi-domain Protein Structure Prediction.
Jayun Choi, Taeyong Park, Seung Yul Lee, Jinsol Yang, Chaok Seok

J Mol Biol· June 2022

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Author Correction: Structural basis of neuropeptide Y signaling through Y1 receptor.
Chaehee Park, Jinuk Kim, Seung-Bum Ko, Yeol Kyo Choi, Hyeongseop Jeong, Chaok Seok

Nat Commun· February 2022

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