Publications by authors named "Charles D Warden"

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Correction: HPV genotyping by L1 amplicon sequencing of archived invasive cervical cancer samples: a pilot study.
Charles D Warden, Preetam Cholli, Hanjun Qin, Chao Guo, Yafan Wang

Infect Agent Cancer· June 2024

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Critical Differential Expression Assessment for Individual Bulk RNA-Seq Projects.
Charles D Warden, Xiwei Wu

bioRxiv· February 2024

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The Gallus gallus RJF reference genome reveals an MHCY haplotype organized in gene blocks that contain 107 loci including 45 specialized, polymorphic MHC class I loci, 41 C-type lectin-like loci, and other loci amid hundreds of transposable elements.
Ronald M Goto, Charles D Warden, Takashi Shiina, Kazuyoshi Hosomichi, Jibin Zhang

G3 (Bethesda)· November 2022

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HPV genotyping by L1 amplicon sequencing of archived invasive cervical cancer samples: a pilot study.
Charles D Warden, Preetam Cholli, Hanjun Qin, Chao Guo, Yafan Wang

Infect Agent Cancer· August 2022

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Loss of SIRT1 inhibits hematopoietic stem cell aging and age-dependent mixed phenotype acute leukemia.
Zhiqiang Wang, Chunxiao Zhang, Charles David Warden, Zheng Liu, Yate-Ching Yuan

Commun Biol· April 2022

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COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis.
Charles D Warden, Heehyoung Lee, Joshua D Tompkins, Xiaojin Li, Charles Wang

Nucleic Acids Res· September 2019

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A Human Embryonic Stem Cell Model of Aβ-Dependent Chronic Progressive Neurodegeneration.
Teresa Ubina, Martha Magallanes, Saumya Srivastava, Charles D Warden, Jiing-Kuan Yee

Front Neurosci· September 2019

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GFAP Mutations in Astrocytes Impair Oligodendrocyte Progenitor Proliferation and Myelination in an hiPSC Model of Alexander Disease.
Li Li, E Tian, Xianwei Chen, Jianfei Chao, Jeremy Klein, Charles D Warden

Cell Stem Cell· August 2018

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Identification of a common mesenchymal stromal progenitor for the adult haematopoietic niche.
Xingbin Hu, Mayra Garcia, Lihong Weng, Xiaoman Jung, Jodi L Murakami, Charles D Warden

Nat Commun· October 2016

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Subtypes of HPV-Positive Head and Neck Cancers Are Associated with HPV Characteristics, Copy Number Alterations, PIK3CA Mutation, and Pathway Signatures.
Yanxiao Zhang, Lada A Koneva, Shama Virani, Anna E Arthur, Alisha Virani, Charles D Warden

Clin Cancer Res· September 2016

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L1CAM is an independent predictor of poor survival in endometrial cancer - An analysis of The Cancer Genome Atlas (TCGA).
Thanh H Dellinger, David D Smith, Ching Ouyang, Charles D Warden, John C Williams

Gynecol Oncol· May 2016

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The Novel Ribonucleotide Reductase Inhibitor COH29 Inhibits DNA Repair In Vitro.
Mei-Chuan Chen, Bingsen Zhou, Keqiang Zhang, Yate-Ching Yuan, Frank Un, Charles D Warden

Mol Pharmacol· June 2015

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The histone demethylase jumonji coordinates cellular senescence including secretion of neural stem cell-attracting cytokines.
Patrick M Perrigue, Michael E Silva, Charles D Warden, Nathan L Feng, Michael A Reid

Mol Cancer Res· April 2015

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Detailed comparison of two popular variant calling packages for exome and targeted exon studies.
Charles D Warden, Aaron W Adamson, Susan L Neuhausen, Xiwei Wu

PeerJ· October 2014

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Glioma IL13Rα2 is associated with mesenchymal signature gene expression and poor patient prognosis.
Christine E Brown, Charles D Warden, Renate Starr, Xutao Deng, Behnam Badie

PLoS One· September 2014

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Prognostic and therapeutic significance of ribonucleotide reductase small subunit M2 in estrogen-negative breast cancers.
Hang Zhang, Xiyong Liu, Charles D Warden, Yasheng Huang, Sofia Loera

BMC Cancer· September 2014

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Global expression of molecular transporters in the human vaginal tract: implications for HIV chemoprophylaxis.
Manjula Gunawardana, Madeline Mullen, John A Moss, Richard B Pyles, Rebecca J Nusbaum, Charles D Warden

PLoS One· June 2014

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BD-Func: a streamlined algorithm for predicting activation and inhibition of pathways.
Charles D Warden, Noriko Kanaya, Shiuan Chen, Yate-Ching Yuan

PeerJ· September 2013

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S100B promotes glioma growth through chemoattraction of myeloid-derived macrophages.
Huaqing Wang, Leying Zhang, Ian Y Zhang, Xuebo Chen, Anna Da Fonseca, Charles D Warden

Clin Cancer Res· July 2013

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COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis.
Charles D Warden, Heehyoung Lee, Joshua D Tompkins, Xiaojin Li, Charles Wang

Nucleic Acids Res· June 2013

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Engineering and optimization of an allosteric biosensor protein for peroxisome proliferator-activated receptor γ ligands.
Jingjing Li, Izabela Gierach, Alison R Gillies, Charles D Warden, David W Wood

Biosens Bioelectron· November 2011

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On comparing two structured RNA multiple alignments.
Vandanaben Patel, Jason T L Wang, Shefali Setia, Anurag Verma, Charles D Warden

J Bioinform Comput Biol· December 2010

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Predicted functional RNAs within coding regions constrain evolutionary rates of yeast proteins.
Charles D Warden, Seong-Ho Kim, Soojin V Yi

PLoS One· February 2008

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