Publications by authors named "Charles Gerfen"

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Integrator dynamics in the cortico-basal ganglia loop for flexible motor timing.
Zidan Yang, Miho Inagaki, Charles R Gerfen, Lorenzo Fontolan, Hidehiko K Inagaki

Nature· November 2025

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Hybrid Solid-Liquid Optics Enable Scalable, High-Resolution, Multi-Immersion Light-Sheet Microscopy.
Cheng Gong, Pauline Affatato, Matt Fay, Sudha R Guttikonda, Nathan J O'Connor, Charles R Gerfen

bioRxiv· November 2025

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Cholinergic-dependent dopamine signals in mouse dorsal striatum are regulated by frontal but not sensory cortices.
Hannah C Goldbach, Rachele Rimondini, Evan S Swanson, Jung Hoon Shin, Michael E Authement, Charles R Gerfen

bioRxiv· September 2025

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Just Go with the Optical Flow: Enhanced Axon Tracing by Modeling Fiber Connections as Motion.
Fin Amin, Roshan Kenia, Benjamin W Roop, Laura J Brattain, Brian S Eastwood, Charles R Gerfen

Annu Int Conf IEEE Eng Med Biol Soc· July 2025

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Brain-wide presynaptic networks of functionally distinct cortical neurons.
Ana R Inácio, Ka Chun Lam, Yuan Zhao, Francisco Pereira, Charles R Gerfen

Nature· May 2025

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ATLAS: a rationally designed anterograde transsynaptic tracer.
Jacqueline F Rivera, Haoyang Huang, Weiguang Weng, Heesung Sohn, Allison E Girasole, Charles R Gerfen

Nat Methods· May 2025

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TOPOLOGY-PRESERVING DEEP SUPERVISION FOR 3D AXON CENTERLINE SEGMENTATION USING PARTIALLY ANNOTATED DATA.
Roshan Kenia, Fin Amin, Benjamin W Roop, Laura J Brattain, Brian S Eastwood, Charles R Gerfen

Proc IEEE Int Symp Biomed Imaging· April 2025

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Cocaine-induced immediate-early gene expression in the nucleus accumbens: roles of separate cAMP sensors.
Hai-Ying Zhang, Tabinda Salman, Guo-Hua Bi, Sunny Z Jiang, Charles R Gerfen

bioRxiv· April 2025

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Molecularly distinct striatonigral neuron subtypes differentially regulate locomotion.
Jie Dong, Lupeng Wang, Breanna T Sullivan, Lixin Sun, Victor M Martinez Smith, Charles R Gerfen

Nat Commun· March 2025

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Distinct brain-wide presynaptic networks underlie the functional identity of individual cortical neurons.
Ana R Inacio, Ka Chun Lam, Yuan Zhao, Francisco Pereira, Charles R Gerfen

bioRxiv· September 2024

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Symmetry in Frontal But Not Motor and Somatosensory Cortical Projections.
Andrew E Papale, Madhumita Harish, Ronald F Paletzki, Nathan J O'Connor, Brian S Eastwood, Charles R Gerfen

J Neurosci· August 2024

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Excessive firing of dyskinesia-associated striatal direct pathway neurons is gated by dopamine and excitatory synaptic input.
Michael B Ryan, Allison E Girasole, Andrew J Flores, Emily L Twedell, Matthew M McGregor, Charles R Gerfen

Cell Rep· August 2024

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Integrator dynamics in the cortico-basal ganglia loop underlie flexible motor timing.
Zidan Yang, Miho Inagaki, Charles R Gerfen, Lorenzo Fontolan, Hidehiko K Inagaki

bioRxiv· July 2024

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How to Prepare Neuroanatomical Image Data (an Update).
Nathan J O'Connor, Paul J Angstman, Jeffrey O Blaisdell, Christopher D Farnsworth, Charles S Gerfen

Curr Protoc· July 2024

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Patch and matrix striatonigral neurons differentially regulate locomotion.
Huaibin Cai, Jie Dong, Lupeng Wang, Breanna Sullivan, Lixin Sun, Charles Gerfen

Res Sq· June 2024

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Symmetry in frontal but not motor and somatosensory cortical projections.
Andrew E Papale, Madhumita Harish, Ronald F Paletzki, Nathan J O'Connor, Brian S Eastwood, Charles R Gerfen

bioRxiv· May 2024

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A distinct cortical code for socially learned threat.
Shana E Silverstein, Ruairi O'Sullivan, Olena Bukalo, Dipanwita Pati, Julia A Schaffer, Charles R Gerfen

Nature· February 2024

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Superior colliculus bidirectionally modulates choice activity in frontal cortex.
Alyse Thomas, Weiguo Yang, Catherine Wang, Sri Laasya Tipparaju, Guang Chen, Charles Gerfen

Nat Commun· November 2023

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Cell-type-specific plasticity shapes neocortical dynamics for motor learning.
Shouvik Majumder, Koichi Hirokawa, Zidan Yang, Ronald Paletzki, Charles R Gerfen

bioRxiv· August 2023

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A genetically defined tecto-thalamic pathway drives a system of superior-colliculus-dependent visual cortices.
Joshua M Brenner, Riccardo Beltramo, Charles R Gerfen, Sarah Ruediger, Massimo Scanziani

Neuron· July 2023

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SELF-SUPERVISED LEARNING TO IMPROVE TOPOLOGY-OPTIMIZED AXON SEGMENTATION AND CENTERLINE DETECTION.
Nina I Shamsi, Lars A Gjesteby, David Chavez, Michael Snyder, Brian S Eastwood, Charles R Gerfen

Proc IEEE Int Symp Biomed Imaging· April 2023

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Distributed processing for value-based choice by prelimbic circuits targeting anterior-posterior dorsal striatal subregions in male mice.
Kyuhyun Choi, Eugenio Piasini, Edgar Díaz-Hernández, Luigim Vargas Cifuentes, Nathan T Henderson, Charles R Gerfen

Nat Commun· April 2023

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Superior colliculus cell types bidirectionally modulate choice activity in frontal cortex.
Alyse Thomas, Weiguo Yang, Catherine Wang, Sri Laasya Tipparaju, Guang Chen, Charles Gerfen

bioRxiv· April 2023

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Postingestive Modulation of Food Seeking Depends on Vagus-Mediated Dopamine Neuron Activity.
Ana B Fernandes, Joaquim Alves da Silva, Joana Almeida, Guohong Cui, Charles R Gerfen

Neuron· February 2023

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Segregation of D1 and D2 dopamine receptors in the striatal direct and indirect pathways: An historical perspective.
Charles R Gerfen

Front Synaptic Neurosci· January 2023

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