Publications by authors named "Charles Plessy"

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The complete mitogenome of an unidentified species.
Johannes Nicolaus Wibisana, Charles Plessy, Nicolas Dierckxsens, Aki Masunaga, Jiashun Miao

F1000Res· April 2025

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Less, but More: New Insights From Appendicularians on Chordate Fgf Evolution and the Divergence of Tunicate Lifestyles.
Gaspar Sánchez-Serna, Jordi Badia-Ramentol, Paula Bujosa, Alfonso Ferrández-Roldán, Nuria P Torres-Águila, Charles Plessy

Mol Biol Evol· January 2025

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Tracing Homopolymers in Oikopleura dioica's Mitogenome.
Nicolas Dierckxsens, Kosei Watanabe, Yongkai Tan, Aki Masunaga, Michael J Mansfield, Charles Plessy

Genome Biol Evol· September 2024

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Extreme genome scrambling in marine planktonic cryptic species.
Charles Plessy, Michael J Mansfield, Aleksandra Bliznina, Aki Masunaga, Charlotte West

Genome Res· April 2024

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Correction: Speed variations of bacterial replisomes.
Deepak Bhat, Samuel Hauf, Charles Plessy, Yohei Yokobayashi, Simone Pigolotti

Elife· April 2023

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Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.
Michiel de Hoon, Alessandro Bonetti, Charles Plessy, Yoshinari Ando, Chung-Chau Hon

Genome Res· September 2022

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Speed variations of bacterial replisomes.
Deepak Bhat, Samuel Hauf, Charles Plessy, Yohei Yokobayashi, Simone Pigolotti

Elife· July 2022

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Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing.
Andrew W Liu, Alejandro Villar-Briones, Nicholas M Luscombe, Charles Plessy

F1000Res· April 2022

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Multi-omics analysis of hiPSCs-derived HLCs matured on-chip revealed patterns typical of liver regeneration.
Mathieu Danoy, Yannick Tauran, Stéphane Poulain, Rachid Jellali, Johanna Bruce, Charles Plessy

Biotechnol Bioeng· October 2021

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Analysis of hiPSCs differentiation toward hepatocyte-like cells upon extended exposition to oncostatin.
Mathieu Danoy, Yannick Tauran, Stéphane Poulain, Hiroshi Arakawa, Daiki Mori, Charles Plessy

Differentiation· July 2021

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Investigation of the hepatic development in the coculture of hiPSCs-derived LSECs and HLCs in a fluidic microenvironment.
Mathieu Danoy, Yannick Tauran, Stephane Poulain, Rachid Jellali, Johanna Bruce, Charles Plessy

APL Bioeng· June 2021

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Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Charles Plessy

Nat Commun· May 2021

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Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq.
Joachim Luginbühl, Tsukasa Kouno, Rei Nakano, Thomas E Chater, Divya M Sivaraman, Charles Plessy

Stem Cell Reports· April 2021

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H3S28P Antibody Staining of Okinawan   Suggests the Presence of Three Chromosomes.
Andrew W Liu, Yongkai Tan, Aki Masunaga, Aleksandra Bliznina, Charlotte West, Charles Plessy

F1000Res· April 2021

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Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing.
Aleksandra Bliznina, Aki Masunaga, Michael J Mansfield, Yongkai Tan, Andrew W Liu, Charles Plessy

BMC Genomics· March 2021

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Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages.
Ayumi Taguchi, Kazunori Nagasaka, Charles Plessy, Hiroe Nakamura, Yoshiko Kawata

Sci Rep· October 2020

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Characterization of liver zonation-like transcriptomic patterns in HLCs derived from hiPSCs in a microfluidic biochip environment.
Mathieu Danoy, Stéphane Poulain, Myriam Lereau-Bernier, Sachi Kato, Benedikt Scheidecker, Charles Plessy

Biotechnol Prog· September 2020

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A genome database for a Japanese population of the larvacean Oikopleura dioica.
Kai Wang, Ryo Tomura, Wei Chen, Miho Kiyooka, Hinako Ishizaki, Charles Plessy

Dev Growth Differ· August 2020

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Widespread use of the "ascidian" mitochondrial genetic code in tunicates.
Julien Pichon, Nicholas M Luscombe, Charles Plessy

F1000Res· June 2020

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Transcriptome profiling of hiPSC-derived LSECs with nanoCAGE.
Mathieu Danoy, Stéphane Poulain, Yuta Koui, Yannick Tauran, Benedikt Scheidecker, Charles Plessy

Mol Omics· April 2020

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Machine-driven parameter screen of biochemical reactions.
Stéphane Poulain, Ophélie Arnaud, Sachi Kato, Iris Chen, Hiro Ishida, Charles Plessy

Nucleic Acids Res· April 2020

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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Charles Plessy

Nat Commun· February 2020

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Analysis of the transcription factors and their regulatory roles during a step-by-step differentiation of induced pluripotent stem cells into hepatocyte-like cells.
Yannick Tauran, Stéphane Poulain, Myriam Lereau-Bernier, Mathieu Danoy, Marie Shinohara, Charles Plessy

Mol Omics· December 2019

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Optimized protocol for the hepatic differentiation of induced pluripotent stem cells in a fluidic microenvironment.
Mathieu Danoy, Myriam Lereau Bernier, Keiichi Kimura, Stephane Poulain, Sachi Kato, Charles Plessy

Biotechnol Bioeng· July 2019

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C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.
Tsukasa Kouno, Jonathan Moody, Andrew Tae-Jun Kwon, Youtaro Shibayama, Sachi Kato, Charles Plessy

Nat Commun· January 2019

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