Publications by authors named "Charlie Carpenter"

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Freezing periphyton samples and storage duration do not affect the use of diatom DNA metabarcoding to determine effects of stressors on streams.
Nathan J Smucker, Erik M Pilgrim, Christopher T Nietch, Charlie Carpenter

Environ Monit Assess· November 2025

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Using DNA metabarcoding to characterize national scale diatom-environment relationships and to develop indicators in streams and rivers of the United States.
Nathan J Smucker, Erik M Pilgrim, Christopher T Nietch, Leslie Gains-Germain, Charlie Carpenter

Sci Total Environ· August 2024

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TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes.
Charlie M Carpenter, Lucas Gillenwater, Russell Bowler, Katerina Kechris, Debashis Ghosh

BMC Bioinformatics· October 2023

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PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes.
Charlie M Carpenter, Weiming Zhang, Lucas Gillenwater, Cameron Severn, Tusharkanti Ghosh

PLoS Comput Biol· October 2021

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tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R.
Charlie M Carpenter, Daniel N Frank, Kayla Williamson, Jaron Arbet, Brandie D Wagner

BMC Bioinformatics· February 2021

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Proteomic Profiles Associated with Early Echocardiogram Evidence of Pulmonary Vascular Disease in Preterm Infants.
Brandie D Wagner, Ana E Babinec, Charlie Carpenter, Samantha Gonzalez, Grace O'Brien

Am J Respir Crit Care Med· February 2018

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