Publications by authors named "Che-Yu Lee"

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AAV-mediated delivery of a broadly neutralizing anti-flavivirus antibody protects against dengue and Zika viruses in a mouse model.
Hui-Ying Ko, Ya-Yuan Li, Yogy Simanjuntak, Han-Peng Yu, Ming-Tsai Chiang, Che-Yu Lee, Yi-Ling Lee

Mol Ther· December 2025

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Single-cell transcriptomic and chromatin dynamics of the human brain in PTSD.
Ahyeon Hwang, Mario Skarica, Siwei Xu, Jensine Coudriet, Che Yu Lee

Nature· July 2025

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Advantages of two quantum programming platforms in quantum computing and quantum chemistry.
Pei-Hua Wang, Wei-Yeh Wu, Che-Yu Lee, Jia-Cheng Hong, Yufeng Jane Tseng

J Cheminform· May 2025

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Characterizing dysregulations via cell-cell communications in Alzheimer's brains using single-cell transcriptomes.
Che Yu Lee, Dylan Riffle, Yifeng Xiong, Nadia Momtaz, Yutong Lei

BMC Neurosci· May 2024

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Single-cell genomics and regulatory networks for 388 human brains.
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Che Yu Lee, Timur Galeev, Donghoon Lee

Science· May 2024

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Single-cell genomics and regulatory networks for 388 human brains.
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Che Yu Lee, Timur Galeev, Donghoon Lee

bioRxiv· March 2024

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scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding.
Ziheng Duan, Siwei Xu, Shushrruth Sai Srinivasan, Ahyeon Hwang, Che Yu Lee

Brief Bioinform· January 2024

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Beneficial Effects of Oral Nutrition Supplements on the Nutritional Status and Physical Performance of Older Nursing Home Residents at Risk of Malnutrition.
Yi-Hsiu Chen, Che-Yu Lee, Jiun-Rong Chen, Min-Yu Ding, Feng-Qi Liang

Nutrients· October 2023

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First Trimester Prediction of Preterm Birth in Patient Plasma with Machine-Learning-Guided Raman Spectroscopy and Metabolomics.
Lilly Synan, Saman Ghazvini, Saji Uthaman, Gabriel Cutshaw, Che-Yu Lee

ACS Appl Mater Interfaces· August 2023

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: a time-aware neural topic model on NIH grant data.
Ruiyi Zhang, Ziheng Duan, CheYu Lee, Dylan Riffle, Martin Renqiang Min

Bioinform Adv· July 2023

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Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data.
Che Yu Lee, Yuhang Chen, Ziheng Duan, Min Xu, Matthew J Girgenti

PLoS Comput Biol· October 2022

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Resolving misalignment interference for NGS-based clinical diagnostics.
Che-Yu Lee, Hai-Yun Yen, Alan W Zhong, Hanlin Gao

Hum Genet· March 2021

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The Value of Parental Testing by Next-Generation Sequencing Includes the Detection of Germline Mosaicism.
Casey J Brewer, Meghan Gillespie, Joseph Fierro, William A Scaringe, Jie Mickey Li, Che-Yu Lee

J Mol Diagn· May 2020

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Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines.
Che-yu Lee, Liang Chen

Bioinformatics· July 2013

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iSARST: an integrated SARST web server for rapid protein structural similarity searches.
Wei-Cheng Lo, Che-Yu Lee, Chi-Ching Lee, Ping-Chiang Lyu

Nucleic Acids Res· July 2009

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CPDB: a database of circular permutation in proteins.
Wei-Cheng Lo, Chi-Ching Lee, Che-Yu Lee, Ping-Chiang Lyu

Nucleic Acids Res· January 2009

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