Publications by authors named "Chenfeng He"

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ATP13A2 as a prognostic biomarker and its correlation with immune infiltration in cervical cancer: A retrospective study.
Zhi Zhao, Yijie Peng, Yuanyuan Yang, Shuaiyu Li, Jiang Ling, Zhenyu Zhu, Chenfeng He

J Cell Mol Med· April 2025

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Establishment and application of an RNAi system in .
Shupeng Ruan, Chenfeng He, Aoxue Wang, Ying Lin, Shuli Liang

Front Bioeng Biotechnol· March 2025

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Pre-training with a rational approach for antibody sequence representation.
Xiangrui Gao, Changling Cao, Chenfeng He, Lipeng Lai

Front Immunol· November 2024

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Phenotype Scoring of Population Scale Single-Cell Data Dissects Alzheimer's Disease Complexity.
Chenfeng He, Athan Z Li, Kalpana Hanthanan Arachchilage, Chirag Gupta, Xiang Huang

medRxiv· November 2024

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Cytochrome P450 F3 promotes colorectal cancer via inhibiting NRF2-mediated ferroptosis.
Ziyang Xu, Cheng Xu, Jie Lu, Chenfeng He, Xinyue Wang, Zhengyun Zhang

Transl Oncol· October 2024

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Cellular senescence triggers intracellular acidification and lysosomal pH alkalinized via ATP6AP2 attenuation in breast cancer cells.
Wei Li, Kosuke Kawaguchi, Sunao Tanaka, Chenfeng He, Yurina Maeshima

Commun Biol· November 2023

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DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype-phenotype prediction.
Pramod Bharadwaj Chandrashekar, Sayali Alatkar, Jiebiao Wang, Gabriel E Hoffman, Chenfeng He

Genome Med· October 2023

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Serum amyloid alpha 1-2 are not required for liver inflammation in the 4T1 murine breast cancer model.
Chenfeng He, Riyo Konishi, Ayano Harata, Yuki Nakamura, Rin Mizuno

Front Immunol· February 2023

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BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids.
Chenfeng He, Noah Cohen Kalafut, Soraya O Sandoval, Ryan Risgaard, Carissa L Sirois, Chen Yang

Cell Rep Methods· February 2023

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Murine breast cancers disorganize the liver transcriptome in a zonated manner.
Alexis Vandenbon, Rin Mizuno, Riyo Konishi, Masaya Onishi, Kyoko Masuda, Chenfeng He

Commun Biol· January 2023

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Bringing machine learning to research on intellectual and developmental disabilities: taking inspiration from neurological diseases.
Chirag Gupta, Pramod Chandrashekar, Ting Jin, Chenfeng He, Saniya Khullar

J Neurodev Disord· May 2022

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Transcriptome and TCR Repertoire Measurements of CXCR3 T Follicular Helper Cells Within HIV-Infected Human Lymph Nodes.
Chenfeng He, Michael J Malone, Ben S Wendel, Ke-Yue Ma, Daniel Del Alcazar

Front Immunol· May 2022

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High-throughput and high-dimensional single-cell analysis of antigen-specific CD8 T cells.
Ke-Yue Ma, Alexandra A Schonnesen, Chenfeng He, Amanda Y Xia, Eric Sun, Eunise Chen, Katherine R Sebastian

Nat Immunol· December 2021

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Lineage Tracking the Generation of T Regulatory Cells From Microbial Activated T Effector Cells in Naïve Mice.
Kun Zhu, Chenfeng He, Si-Qi Liu, Mingjuan Qu, Tao Xie, Yanbin Cheng, Huiqiang Zheng, Xiaonan Shen

Front Immunol· November 2020

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Rapid HIV Progression Is Associated with Extensive Ongoing Somatic Hypermutation.
Ben S Wendel, Yajing Fu, Chenfeng He, Stefany M Hernandez, Mingjuan Qu

J Immunol· August 2020

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DNA damage repair functions and targeted treatment in breast cancer.
Chenfeng He, Kosuke Kawaguchi, Masakazu Toi

Breast Cancer· May 2020

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Mapping the Lineage Relationship between CXCR5 and CXCR5 CD4 T Cells in HIV-Infected Human Lymph Nodes.
Daniel Del Alcazar, Yifeng Wang, Chenfeng He, Ben S Wendel, Perla M Del Río-Estrada, Stefany M Hernandez

Cell Rep· September 2019

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Immune Repertoire Sequencing Using Molecular Identifiers Enables Accurate Clonality Discovery and Clone Size Quantification.
Ke-Yue Ma, Chenfeng He, Ben S Wendel, Chad M Williams, Jun Xiao

Front Immunol· February 2019

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High-throughput determination of the antigen specificities of T cell receptors in single cells.
Shu-Qi Zhang, Ke-Yue Ma, Alexandra A Schonnesen, Mingliang Zhang, Chenfeng He

Nat Biotechnol· November 2018

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The receptor repertoire and functional profile of follicular T cells in HIV-infected lymph nodes.
Ben S Wendel, Daniel Del Alcazar, Chenfeng He, Perla M Del Río-Estrada, Benjamas Aiamkitsumrit, Stefany M Hernandez

Sci Immunol· April 2018

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Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children.
Ben S Wendel, Chenfeng He, Mingjuan Qu, Di Wu, Stefany M Hernandez, Keke Chen

Nat Commun· September 2017

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A Streamlined Approach to Antibody Novel Germline Allele Prediction and Validation.
Ben S Wendel, Chenfeng He, Peter D Crompton, Susan K Pierce, Ning Jiang

Front Immunol· September 2017

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Normalized Synergy Predicts That CD8 Co-Receptor Contribution to T Cell Receptor (TCR) and pMHC Binding Decreases As TCR Affinity Increases in Human Viral-Specific T Cells.
Chad M Williams, Alexandra A Schonnesen, Shu-Qi Zhang, Ke-Yue Ma, Chenfeng He, Christopher A Klebanoff

Front Immunol· July 2017

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The Regulation of Inherently Autoreactive VH4-34-Expressing B Cells in Individuals Living in a Malaria-Endemic Area of West Africa.
Geoffrey T Hart, Munir Akkaya, Asiya S Chida, Chungwen Wei, Scott A Jenks, Christopher Tipton, Chenfeng He

J Immunol· November 2016

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Direct measurement of T cell receptor affinity and sequence from naïve antiviral T cells.
Shu-Qi Zhang, Patricia Parker, Ke-Yue Ma, Chenfeng He, Qian Shi, Amanda I Meriwether

Sci Transl Med· June 2016

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