Publications by authors named "Chengfei Yan"

Claim this Profile
P
Protein language model-embedded geometric graphs power inter-protein contact prediction.
Yunda Si, Chengfei Yan

Elife· April 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Preparation and pH Detection Performance of Rosin-Based Fluorescent Polyurethane Microspheres.
Caili Yu, Guangjie Lu, Chengfei Yan, Jianben Xu, Faai Zhang

J Fluoresc· July 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Improved inter-protein contact prediction using dimensional hybrid residual networks and protein language models.
Yunda Si, Chengfei Yan

Brief Bioinform· March 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models.
Joel Rozowsky, Jiahao Gao, Beatrice Borsari, Yucheng T Yang, Timur Galeev, Keyang Yu, Chengfei Yan

Cell· March 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Protein complex structure prediction powered by multiple sequence alignments of interologs from multiple taxonomic ranks and AlphaFold2.
Yunda Si, Chengfei Yan

Brief Bioinform· July 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A reproducibility analysis-based statistical framework for residue-residue evolutionary coupling detection.
Yunda Si, Yi Zhang, Chengfei Yan

Brief Bioinform· March 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Improved protein contact prediction using dimensional hybrid residual networks and singularity enhanced loss function.
Yunda Si, Chengfei Yan

Brief Bioinform· November 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.
Anurag Sethi, Mengting Gu, Emrah Gumusgoz, Landon Chan, Koon-Kiu Yan, Chengfei Yan

Nat Methods· August 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
B
Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.
Bo Wang, Chengfei Yan, Shaoke Lou, Prashant Emani, Bian Li, Yucheng T Yang

Structure· September 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genomics and data science: an application within an umbrella.
Fábio C P Navarro, Hussein Mohsen, Chengfei Yan, Shantao Li, Mengting Gu

Genome Biol· May 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Comprehensive functional genomic resource and integrative model for the human brain.
Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Yucheng T Yang, Chengfei Yan, Yan Jiang

Science· December 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
MDockPeP: An ab-initio protein-peptide docking server.
Xianjin Xu, Chengfei Yan, Xiaoqin Zou

J Comput Chem· October 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The Usage of ACCLUSTER for Peptide Binding Site Prediction.
Chengfei Yan, Xianjin Xu, Xiaoqin Zou

Methods Mol Biol· February 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.
Xianjin Xu, Chengfei Yan, Xiaoqin Zou

J Comput Aided Mol Des· August 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.
Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S Noble, Mark Gerstein

Bioinformatics· July 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.
Xianjin Xu, Liming Qiu, Chengfei Yan, Zhiwei Ma, Sam Z Grinter

Proteins· March 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
F
Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.
Chengfei Yan, Xianjin Xu, Xiaoqin Zou

Structure· October 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Marc F Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovny, Chengfei Yan, Yang Shen

Proteins· September 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks.
Chengfei Yan, Sam Z Grinter, Benjamin Ryan Merideth, Zhiwei Ma, Xiaoqin Zou

J Chem Inf Model· June 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Computation and simulation of the structural characteristics of the kidney urea transporter and behaviors of urea transport.
Zhe Wang, Tao Yu, Jian-Ping Sang, Xian-Wu Zou, Chengfei Yan

J Phys Chem B· April 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Predicting peptide binding sites on protein surfaces by clustering chemical interactions.
Chengfei Yan, Xiaoqin Zou

J Comput Chem· January 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A chemical genetic approach demonstrates that MPK3/MPK6 activation and NADPH oxidase-mediated oxidative burst are two independent signaling events in plant immunity.
Juan Xu, Jie Xie, Chengfei Yan, Xiaoqin Zou, Dongtao Ren

Plant J· January 2014

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI).
Sheng-You Huang, Chengfei Yan, Sam Z Grinter, Shan Chang, Lin Jiang

Proteins· December 2013

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Automated large-scale file preparation, docking, and scoring: evaluation of ITScore and STScore using the 2012 Community Structure-Activity Resource benchmark.
Sam Z Grinter, Chengfei Yan, Sheng-You Huang, Lin Jiang, Xiaoqin Zou

J Chem Inf Model· August 2013

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis