Publications by authors named "Chengyang Ji"

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Development and validation of a nomogram for a prognostic model for resected pancreatic ductal adenocarcinoma.
Tian-Liang Song, Fan Zhang, Chong Zhang, Hui-Juan Cheng, Ewetse Paul Maswikiti, Cheng-Yang Ji

Hepatobiliary Pancreat Dis Int· December 2025

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Single-cell analysis reveals that GFAP dedifferentiated Schwann cells promote tumor progress in PNI-positive distal cholangiocarcinoma via lactate/HMGB1 axis.
Ziyang Zu, Chong Zhang, Jianxiang Shi, Kunlun Chen, Hongwei Tang, Chengyang Ji, Xiaojing Shi

Cell Death Dis· March 2025

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Comprehensive detection and dissection of interlineage recombination events in the SARS-CoV-2 pandemic.
Jia-Ying Li, Hao-Yang Wang, Ye-Xiao Cheng, Chengyang Ji, Shenghui Weng

Virus Evol· September 2024

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Web Resources for SARS-CoV-2 Genomic Database, Annotation, Analysis and Variant Tracking.
Yexiao Cheng, Chengyang Ji, Hang-Yu Zhou, Heng Zheng, Aiping Wu

Viruses· May 2023

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Genomic annotation and molecular evolution of monkeypox virus outbreak in 2022.
Lulan Wang, Jingzhe Shang, Shenghui Weng, Saba R Aliyari, Chengyang Ji

J Med Virol· January 2023

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sitePath: a visual tool to identify polymorphism clades and help find fixed and parallel mutations.
Chengyang Ji, Na Han, Yexiao Cheng, Jingzhe Shang, Shenghui Weng

BMC Bioinformatics· November 2022

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covSampler: A subsampling method with balanced genetic diversity for large-scale SARS-CoV-2 genome data sets.
Yexiao Cheng, Chengyang Ji, Na Han, Jiaying Li, Lin Xu

Virus Evol· August 2022

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Genomic evidence for divergent co-infections of co-circulating SARS-CoV-2 lineages.
Hang-Yu Zhou, Ye-Xiao Cheng, Lin Xu, Jia-Ying Li, Chen-Yue Tao, Cheng-Yang Ji

Comput Struct Biotechnol J· July 2022

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Genetic differentiation and diversity of SARS-CoV-2 Omicron variant in its early outbreak.
Shenghui Weng, Jingzhe Shang, Yexiao Cheng, Hangyu Zhou, Chengyang Ji

Biosaf Health· June 2022

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Detecting Potentially Adaptive Mutations from the Parallel and Fixed Patterns in SARS-CoV-2 Evolution.
Cheng-Yang Ji, Na Han, Ye-Xiao Cheng, Jingzhe Shang, Shenghui Weng

Viruses· May 2022

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Conserved Pattern and Potential Role of Recurrent Deletions in SARS-CoV-2 Evolution.
Shenghui Weng, Hangyu Zhou, Chengyang Ji, Liang Li, Na Han, Jingzhe Shang

Microbiol Spectr· April 2022

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Convergent evolution of SARS-CoV-2 in human and animals.
Hang-Yu Zhou, Cheng-Yang Ji, Hang Fan, Na Han, Xiao-Feng Li

Protein Cell· November 2021

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One year of SARS-CoV-2 evolution.
Aiping Wu, Lulan Wang, Hang-Yu Zhou, Cheng-Yang Ji, Shang Zhou Xia, Jing Meng, Taijiao Jiang

Cell Host Microbe· April 2021

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Compositional diversity and evolutionary pattern of coronavirus accessory proteins.
Jingzhe Shang, Na Han, Ziyi Chen, Yousong Peng, Liang Li, Chengyang Ji, Jing Meng, Taijiao Jiang

Brief Bioinform· March 2021

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Mutations, Recombination and Insertion in the Evolution of 2019-nCoV.
Aiping Wu, Peihua Niu, Lulan Wang, Hangyu Zhou, Xiang Zhao, Jingfeng Wang, Chengyang Ji, Roujian Lu, Taijiao Jiang, Wenjie Tan

bioRxiv· March 2020

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Tissue-specific deconvolution of immune cell composition by integrating bulk and single-cell transcriptomes.
Ziyi Chen, Chengyang Ji, Qin Shen, Wei Liu, F Xiao-Feng Qin

Bioinformatics· February 2020

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Cluster-Transition Determining Sites Underlying the Antigenic Evolution of Seasonal Influenza Viruses.
Lijun Quan, Chengyang Ji, Xiao Ding, Yousong Peng, Mi Liu, Jiya Sun, Taijiao Jiang

Mol Biol Evol· June 2019

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