Publications by authors named "Chih-Hsu Lin"

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An integrated analysis of the cancer genome atlas data discovers a hierarchical association structure across thirty three cancer types.
Khong-Loon Tiong, Nardnisa Sintupisut, Min-Chin Lin, Chih-Hung Cheng, Andrew Woolston, Chih-Hsu Lin, Yu-Wei Lin

PLOS Digit Health· December 2022

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A general calculus of fitness landscapes finds genes under selection in cancers.
Teng-Kuei Hsu, Jennifer Asmussen, Amanda Koire, Byung-Kwon Choi, Mayur A Gadhikar, Chih-Hsu Lin

Genome Res· May 2022

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Using interpretable deep learning to model cancer dependencies.
Chih-Hsu Lin, Olivier Lichtarge

Bioinformatics· September 2021

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Discovery of disease- and drug-specific pathways through community structures of a literature network.
Minh Pham, Stephen Wilson, Harikumar Govindarajan, Chih-Hsu Lin, Olivier Lichtarge

Bioinformatics· June 2020

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Discovery of disease- and drug-specific pathways through community structures of a literature network.
Minh Pham, Stephen Wilson, Harikumar Govindarajan, Chih-Hsu Lin, Olivier Lichtarge

Bioinformatics· March 2020

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Multimodal network diffusion predicts future disease-gene-chemical associations.
Chih-Hsu Lin, Daniel M Konecki, Meng Liu, Stephen J Wilson, Huda Nassar

Bioinformatics· May 2019

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DISCOVERY OF FUNCTIONAL AND DISEASE PATHWAYS BY COMMUNITY DETECTION IN PROTEIN-PROTEIN INTERACTION NETWORKS.
Stephen J Wilson, Angela D Wilkins, Chih-Hsu Lin, Rhonald C Lua, Olivier Lichtarge

Pac Symp Biocomput· June 2017

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A quantitative model for the rate-limiting process of UGA alternative assignments to stop and selenocysteine codons.
Yen-Fu Chen, Hsiu-Chuan Lin, Kai-Neng Chuang, Chih-Hsu Lin, Hsueh-Chi S Yen

PLoS Comput Biol· February 2017

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Analysis of spatial-temporal gene expression patterns reveals dynamics and regionalization in developing mouse brain.
Shen-Ju Chou, Chindi Wang, Nardnisa Sintupisut, Zhen-Xian Niou, Chih-Hsu Lin

Sci Rep· January 2016

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Role of antisense RNAs in evolution of yeast regulatory complexity.
Chih-Hsu Lin, Zing Tsung-Yeh Tsai, Daryi Wang

Genomics· July 2014

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Examining the condition-specific antisense transcription in S. cerevisiae and S. paradoxus.
Krishna B S Swamy, Chih-Hsu Lin, Ming-Ren Yen, Chuen-Yi Wang, Daryi Wang

BMC Genomics· June 2014

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Evolution of cis-regulatory elements in yeast de novo and duplicated new genes.
Zing Tsung-Yeh Tsai, Huai-Kuang Tsai, Jen-Hao Cheng, Chih-Hsu Lin, Yuan-Fan Tsai

BMC Genomics· December 2012

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