Publications by authors named "Chiyoko Machida"

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Development of a Simple and Locus-Restricted DNA Methylation Editing System Using Direct Fusion of a Nickase-Type SpCas9 and DNA Methylation-Related Enzymes in Arabidopsis thaliana.
Shunya Hirata, Taisei Ozono, Kenshin Kawai, Chiyoko Machida, Kappei Kobayashi

Plant Cell Physiol· December 2025

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Arabidopsis ASYMMETRIC LEAVES2 and Nucleolar Factors Are Coordinately Involved in the Perinucleolar Patterning of AS2 Bodies and Leaf Development.
Sayuri Ando, Mika Nomoto, Hidekazu Iwakawa, Simon Vial-Pradel, Lilan Luo, Yasunori Machida, Chiyoko Machida

Plants (Basel)· October 2023

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Arabidopsis ASYMMETRIC LEAVES2 (AS2): roles in plant morphogenesis, cell division, and pathogenesis.
Yasunori Machida, Takanori Suzuki, Michiko Sasabe, Hidekazu Iwakawa, Shoko Kojima, Chiyoko Machida

J Plant Res· January 2022

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Draft Genome Sequence of NYR20, a Red Pigment-Secreting Mutant of Saccharomyces cerevisiae.
Hiro Takahashi, Shin-Ichi Iwaguchi, Hisashi Kondo, Taichiro Motomura, Masataka Murase, Chiyoko Machida

Microbiol Resour Announc· January 2021

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Roles of ASYMMETRIC LEAVES2 (AS2) and Nucleolar Proteins in the Adaxial-Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis.
Hidekazu Iwakawa, Hiro Takahashi, Yasunori Machida, Chiyoko Machida

Int J Mol Sci· October 2020

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Draft Genome Sequence of Saccharomyces cerevisiae Strain P-684, Isolated from Prunus verecunda.
Hiro Takahashi, Takayuki Yoshizaki, Hisashi Kondo, Taichiro Motomura, Masataka Murase, Chiyoko Machida

Microbiol Resour Announc· October 2020

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The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2.
Lilan Luo, Sayuri Ando, Yuki Sakamoto, Takanori Suzuki, Hiro Takahashi, Chiyoko Machida, Yasunori Machida

Plant J· March 2020

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SIMON: Simple methods for analyzing DNA methylation by targeted bisulfite next-generation sequencing.
Simon Vial-Pradel, Yoshinori Hasegawa, Ayami Nakagawa, Shido Miyaki, Yasunori Machida, Chiyoko Machida

Plant Biotechnol (Tokyo)· December 2019

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Draft Genome Sequence of Saccharomyces cerevisiae Strain Pf-1, Isolated from Prunus mume.
Shin Kanamasa, Daiki Yamaguchi, Chiyoko Machida, Tsukasa Fujimoto, Anna Takahashi

Microbiol Resour Announc· November 2019

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Draft Genome Sequence of Saccharomyces cerevisiae Strain Hm-1, Isolated from Cotton Rosemallow.
Hiro Takahashi, Erika Sakagawa, Ikuya Sakakibara, Chiyoko Machida, Shido Miyaki

Microbiol Resour Announc· October 2018

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Arabidopsis Zinc-Finger-Like Protein ASYMMETRIC LEAVES2 (AS2) and Two Nucleolar Proteins Maintain Gene Body DNA Methylation in the Leaf Polarity Gene ETTIN (ARF3).
Simon Vial-Pradel, Sumie Keta, Mika Nomoto, Lilan Luo, Hiro Takahashi, Yasunori Machida, Chiyoko Machida

Plant Cell Physiol· July 2018

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A genetic link between epigenetic repressor AS1-AS2 and DNA replication factors in establishment of adaxial-abaxial leaf polarity of .
Toan Quy Luong, Sumie Keta, Toshiharu Asai, Shoko Kojima, Ayami Nakagawa, Yasunori Machida, Chiyoko Machida

Plant Biotechnol (Tokyo)· March 2018

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The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
Chiyoko Machida, Ayami Nakagawa, Shoko Kojima, Hiro Takahashi, Yasunori Machida

Wiley Interdiscip Rev Dev Biol· July 2016

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A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
Yoko Matsumura, Iwai Ohbayashi, Hiro Takahashi, Shoko Kojima, Nanako Ishibashi, Chiyoko Machida, Yasunori Machida

Biol Open· July 2016

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Protein encoded by oncogene 6b from Agrobacterium tumefaciens has a reprogramming potential and histone chaperone-like activity.
Nanako Ishibashi, Saeko Kitakura, Shinji Terakura, Chiyoko Machida, Yasunori Machida

Front Plant Sci· November 2014

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Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis.
Mayumi Iwasaki, Hiro Takahashi, Hidekazu Iwakawa, Ayami Nakagawa, Takaaki Ishikawa, Yasunori Machida, Chiyoko Machida

Development· May 2013

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Meta-analyses of microarrays of Arabidopsis asymmetric leaves1 (as1), as2 and their modifying mutants reveal a critical role for the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development.
Hiro Takahashi, Hidekazu Iwakawa, Nanako Ishibashi, Shoko Kojima, Yoko Matsumura, Yasunori Machida, Chiyoko Machida

Plant Cell Physiol· March 2013

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Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods.
Hiro Takahashi, Ayami Nakagawa, Shoko Kojima, Anna Takahashi, Byung-Yoon Cha, Yasunori Machida, Chiyoko Machida

J Biosci Bioeng· November 2012

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Arabidopsis ASYMMETRIC LEAVES2 protein required for leaf morphogenesis consistently forms speckles during mitosis of tobacco BY-2 cells via signals in its specific sequence.
Lilan Luo, Sayuri Ando, Michiko Sasabe, Chiyoko Machida, Daisuke Kurihara, Yasunori Machida

J Plant Res· September 2012

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Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana.
Ayami Nakagawa, Hiro Takahashi, Shoko Kojima, Nobuo Sato, Kazuomi Ohga, Yasunori Machida, Chiyoko Machida

Plant Mol Biol· August 2012

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ASYMMETRIC-LEAVES2 and an ortholog of eukaryotic NudC domain proteins repress expression of AUXIN-RESPONSE-FACTOR and class 1 KNOX homeobox genes for development of flat symmetric leaves in Arabidopsis.
Nanako Ishibashi, Kyoko Kanamaru, Yoshihisa Ueno, Shoko Kojima, Tetsuo Kobayashi, Chiyoko Machida, Yasunori Machida

Biol Open· March 2012

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Asymmetric leaves2 and Elongator, a histone acetyltransferase complex, mediate the establishment of polarity in leaves of Arabidopsis thaliana.
Shoko Kojima, Mayumi Iwasaki, Hiro Takahashi, Tomoya Imai, Yoko Matsumura, Yasunori Machida, Chiyoko Machida

Plant Cell Physiol· August 2011

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Genetic networks regulated by ASYMMETRIC LEAVES1 (AS1) and AS2 in leaf development in Arabidopsis thaliana: KNOX genes control five morphological events.
Masaya Ikezaki, Mikiko Kojima, Hitoshi Sakakibara, Shoko Kojima, Yoshihisa Ueno, Chiyoko Machida, Yasunori Machida

Plant J· January 2010

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Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
Yoko Matsumura, Hidekazu Iwakawa, Yasunori Machida, Chiyoko Machida

Plant J· May 2009

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Knowledge-based fuzzy adaptive resonance theory and its application to the analysis of gene expression in plants.
Hiro Takahashi, Hidekazu Iwakawa, Sachiko Nakao, Takahiro Ojio, Ryo Morishita, Yasunori Machida, Chiyoko Machida

J Biosci Bioeng· December 2008

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