Publications by authors named "Christophe Audebert"

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Molecular Identification and Subtype Analysis of sp. Isolates from Wild Mussels () in Northern France.
Manon Ryckman, Nausicaa Gantois, Ruben Garcia Dominguez, Jeremy Desramaut, Luen-Luen Li, Christophe Audebert

Microorganisms· March 2024

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Frequency and Molecular Identification of in Adult Prim'Holstein Dairy Cattle Farms in the North of France.
Gabriela Certad, Nausicaa Gantois, Sophie Merlin, Sophie Martel, Gaël Even, Christophe Audebert

Microorganisms· February 2024

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[A novel strategy taking gut microbiota fingerprints into account for robust and reproducible animal experiments].
Christophe Audebert, Gaël Even, Nicolas Vandenabeele, Anthony Mouray, Magali Chabé

Med Sci (Paris)· December 2023

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Bact-to-Batch: A Microbiota-Based Tool to Determine Optimal Animal Allocation in Experimental Designs.
Gaël Even, Anthony Mouray, Nicolas Vandenabeele, Sophie Martel, Sophie Merlin, Christophe Audebert

Int J Mol Sci· April 2023

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A multiplex serological assay for the characterization of IgG immune response to SARS-CoV-2.
Etienne Brochot, Vianney Souplet, Pauline Follet, Pauline Ponthieu, Christophe Olivier, Christophe Audebert

PLoS One· January 2022

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Changes in the Human Gut Microbiota Associated With Colonization by sp. and spp. in Non-Industrialized Populations.
Gaël Even, Ana Lokmer, Jules Rodrigues, Christophe Audebert, Eric Viscogliosi

Front Cell Infect Microbiol· June 2021

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Agrodiag PorCoV: A multiplex immunoassay for the differential diagnosis of porcine enteric coronaviruses.
Rémi Malbec, Kay Kimpston-Burkgren, Elisa Vandenkoornhuyse, Christophe Olivier, Vianney Souplet, Christophe Audebert

J Immunol Methods· August 2020

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The Formation of Glycan-Specific Natural Antibodies Repertoire in GalT-KO Mice Is Determined by Gut Microbiota.
Daniel Bello-Gil, Christophe Audebert, Sara Olivera-Ardid, Magdiel Pérez-Cruz, Gaël Even

Front Immunol· May 2020

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Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates.
Christophe Audebert, Franck Bonardi, Ségolène Caboche, Karine Guyot, Hélène Touzet

Sci Rep· April 2020

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Porcine bacteriospermia examined by high-throughput sequencing.
Gaël Even, David Mottais, Florianne Morien, Minh Duc Pham, Anaïs Ostergaard, Christophe Audebert

Theriogenology· January 2020

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The Impact of Bioinformatics Pipelines on Microbiota Studies: Does the Analytical "Microscope" Affect the Biological Interpretation?
Léa Siegwald, Ségolène Caboche, Gaël Even, Eric Viscogliosi, Christophe Audebert

Microorganisms· September 2019

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[Prospects for applications in human health of nanopore-based sequencing].
Christophe Audebert, David Hot, Ségolène Caboche

Med Sci (Paris)· April 2018

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MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data.
Ségolène Caboche, Gaël Even, Alexandre Loywick, Christophe Audebert, David Hot

Genome Biol· December 2017

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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.
Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert

PLoS One· August 2017

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Effects of Propidium Monoazide (PMA) Treatment on Mycobiome and Bacteriome Analysis of Cystic Fibrosis Airways during Exacerbation.
Linh Do Ngoc Nguyen, Pieter Deschaght, Sophie Merlin, Alexandre Loywick, Christophe Audebert

PLoS One· July 2017

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Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonization.
Léa Siegwald, Christophe Audebert, Gaël Even, Eric Viscogliosi, Ségolène Caboche

Sci Data· June 2017

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Relationship Between Pneumocystis carinii Burden and the Degree of Host Immunosuppression in an Airborne Transmission Experimental Model.
Sara Khalife, Magali Chabé, Nausicaa Gantois, Christophe Audebert, Muriel Pottier

J Eukaryot Microbiol· May 2016

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Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota.
Christophe Audebert, Gaël Even, Amandine Cian, , Alexandre Loywick

Sci Rep· May 2016

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Photodynamic therapy relieves colitis and prevents colitis-associated carcinogenesis in mice.
Aurélie Reinhard, Aude Bressenot, Romain Dassonneville, Alexandre Loywick, David Hot, Christophe Audebert

Inflamm Bowel Dis· May 2015

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[High-throughput sequencing: towards a genome-based diagnosis in infectious diseases].
Christophe Audebert, David Hot, Yves Lemoine, Ségolène Caboche

Med Sci (Paris)· December 2014

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An improved single-round PCR leads to rapid and highly sensitive detection of Pneumocystis spp.
Magali Chabé, Sara Khalife, Nausicaa Gantois, Gaël Even, Christophe Audebert

Med Mycol· November 2014

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Cryptosporidium parvum-induced ileo-caecal adenocarcinoma and Wnt signaling in a mouse model.
Sadia Benamrouz, Valerie Conseil, Magali Chabé, Marleen Praet, Christophe Audebert

Dis Model Mech· June 2014

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Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.
Ségolène Caboche, Christophe Audebert, Yves Lemoine, David Hot

BMC Genomics· April 2014

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High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology.
Ségolène Caboche, Christophe Audebert, David Hot

Pathogens· April 2014

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