Publications by authors named "Christopher D Shaffer"

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Gene model for the ortholog of in .
Nora Doughty, Ethan Pini, Alizabeth Tobin, Mia Lacenere, Allison Rea, Christopher D Shaffer

MicroPubl Biol· November 2025

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Whole-genome sequence of subcluster BE1 bacteriophage Persimmon.
Wanji Li, Meiru Shang, Kathleen Weston Hafer, Christopher D Shaffer

Microbiol Resour Announc· June 2025

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An inclusive Research Education Community (iREC) Model to Facilitate Undergraduate Science Education Reform.
Denise L Monti, Julia C Gill, Tamarah L Adair, Sandra D Adams, Yesmi Patricia Ahumada-Santos, Christopher D Shaffer

Front Educ (Lausanne)· August 2024

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Models of Classroom Assessment for Course-Based Research Experiences.
David I Hanauer, Tong Zhang, Mark J Graham, Sandra D Adams, Yesmi Patricia Ahumada-Santos, Christopher D Shaffer

Front Educ (Lausanne)· November 2023

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Student Attitudes Contribute to the Effectiveness of a Genomics CURE.
David Lopatto, Anne G Rosenwald, Rebecca C Burgess, Catherine Silver Key, Melanie Van Stry, Christopher D Shaffer

J Microbiol Biol Educ· August 2022

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Instructional Models for Course-Based Research Experience (CRE) Teaching.
David I Hanauer, Mark J Graham, Rachel J Arnold, Mary A Ayuk, Mitchell F Balish, Christopher D Shaffer

CBE Life Sci Educ· March 2022

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Genomic diversity of bacteriophages infecting Microbacterium spp.
Deborah Jacobs-Sera, Lawrence A Abad, Richard M Alvey, Kirk R Anders, Haley G Aull, Christopher D Shaffer

PLoS One· August 2020

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Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience.
David Lopatto, Anne G Rosenwald, Justin R DiAngelo, Amy T Hark, Matthew Skerritt, Christopher D Shaffer

J Microbiol Biol Educ· February 2020

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Eight Genome Sequences of Cluster BE1 Phages That Infect Species.
Lee E Hughes, Christopher D Shaffer, Vassie C Ware, Issac Aguayo, Rahat M Aziz

Genome Announc· January 2018

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Retrotransposons Are the Major Contributors to the Expansion of the Muller F Element.
Wilson Leung, Christopher D Shaffer, Elizabeth J Chen, Thomas J Quisenberry, Kevin Ko

G3 (Bethesda)· August 2017

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A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics.
David Lopatto, Charles Hauser, Christopher J Jones, Don Paetkau, Vidya Chandrasekaran, Christopher D Shaffer

CBE Life Sci Educ· August 2015

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Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution.
Wilson Leung, Christopher D Shaffer, Laura K Reed, Sheryl T Smith, William Barshop

G3 (Bethesda)· March 2015

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A course-based research experience: how benefits change with increased investment in instructional time.
Christopher D Shaffer, Consuelo J Alvarez, April E Bednarski, David Dunbar, Anya L Goodman

CBE Life Sci Educ· October 2014

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Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes.
Welkin H Pope, Kirk R Anders, Madison Baird, Charles A Bowman, Michelle M Boyle, Christopher D Shaffer

J Virol· March 2014

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A broadly implementable research course in phage discovery and genomics for first-year undergraduate students.
Tuajuanda C Jordan, Sandra H Burnett, Susan Carson, Steven M Caruso, Kari Clase, Christopher D Shaffer

mBio· February 2014

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Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4.
Welkin H Pope, Christina M Ferreira, Deborah Jacobs-Sera, Robert C Benjamin, Ariangela J Davis, Christopher D Shaffer

PLoS One· February 2012

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Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.
Welkin H Pope, Deborah Jacobs-Sera, Daniel A Russell, Craig L Peebles, Zein Al-Atrache, Christopher D Shaffer

PLoS One· January 2011

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Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis.
Wilson Leung, Christopher D Shaffer, Taylor Cordonnier, Jeannette Wong, Michelle S Itano

Genetics· August 2010

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The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions.
Christopher D Shaffer, Consuelo Alvarez, Cheryl Bailey, Daron Barnard, Satish Bhalla

CBE Life Sci Educ· May 2010

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A lot about a little dot - lessons learned from Drosophila melanogaster chromosome 4.
Nicole C Riddle, Christopher D Shaffer, Sarah C R Elgin

Biochem Cell Biol· February 2009

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The large isoform of Drosophila melanogaster heterochromatin protein 2 plays a critical role in gene silencing and chromosome structure.
Christopher D Shaffer, Giovanni Cenci, Brandi Thompson, Gena E Stephens, Elizabeth E Slawson

Genetics· November 2006

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Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains.
Elizabeth E Slawson, Christopher D Shaffer, Colin D Malone, Wilson Leung, Elmer Kellmann

Genome Biol· July 2006

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Heterochromatin protein 2 (HP2), a partner of HP1 in Drosophila heterochromatin.
Christopher D Shaffer, Gena E Stephens, Brandi A Thompson, Levi Funches, John A Bernat

Proc Natl Acad Sci U S A· October 2002

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