Publications by authors named "Chun-Quan Li"

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ATACdb 2.0: a comprehensive chromatin accessibility database of human and mouse.
Qiao-Li Fang, Feng-Cui Qian, Zheng-Min Yu, Bing-Long Li, Xiang-Yang Meng, Yan-Yu Li, Li-Dong Li, Chun-Quan Li

Nucleic Acids Res· November 2025

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scVMAP: a comprehensive platform for integrating single-cell chromatin accessibility regions with causal variants.
Zheng-Min Yu, Feng-Cui Qian, Qiao-Li Fang, Xiang-Yang Meng, Yan-Yu Li, Li-Dong Li, Bing-Long Li, Chun-Quan Li

Nucleic Acids Res· October 2025

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SpatialRef: a reference of spatial omics with known spot annotation.
Ting Cui, Yan-Yu Li, Bing-Long Li, Han Zhang, Ting-Ting Yu, Qiao-Li Fang, Chun-Quan Li

Nucleic Acids Res· January 2025

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scImmOmics: a manually curated resource of single-cell multi-omics immune data.
Yan-Yu Li, Li-Wei Zhou, Feng-Cui Qian, Qiao-Li Fang, Zheng-Min Yu, Li-Dong Li, Chun-Quan Li

Nucleic Acids Res· January 2025

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scBlood: A comprehensive single-cell accessible chromatin database of blood cells.
Yu Zhao, Zheng-Min Yu, Ting Cui, Li-Dong Li, Yan-Yu Li, Li-Wei Zhou, Ye Li, Qiao-Li Fang, Chun-Quan Li

Comput Struct Biotechnol J· December 2024

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FunlncModel: integrating multi-omic features from upstream and downstream regulatory networks into a machine learning framework to identify functional lncRNAs.
Yan-Yu Li, Feng-Cui Qian, Guo-Rui Zhang, Xue-Cang Li, Li-Wei Zhou, Wei Liu, Chun-Quan Li

Brief Bioinform· November 2024

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scATAC-Ref: a reference of scATAC-seq with known cell labels in multiple species.
Feng-Cui Qian, Li-Wei Zhou, Yan-Bing Zhu, Yan-Yu Li, Zheng-Min Yu, Qiao-Li Fang, Chun-Quan Li

Nucleic Acids Res· January 2024

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SEanalysis 2.0: a comprehensive super-enhancer regulatory network analysis tool for human and mouse.
Feng-Cui Qian, Li-Wei Zhou, Yan-Yu Li, Zheng-Min Yu, Li-Dong Li, Chun-Quan Li

Nucleic Acids Res· July 2023

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Large-scale and high-resolution mass spectrometry-based proteomics profiling defines molecular subtypes of esophageal cancer for therapeutic targeting.
Wei Liu, Lei Xie, Yao-Hui He, Zhi-Yong Wu, Lu-Xin Liu, Lian-Di Liao, Wan Lin, Liu Peng, Cheng-Yu Li, Chun-Quan Li, Li-Yan Xu, Wen Liu, En-Min Li

Nat Commun· August 2021

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VARAdb: a comprehensive variation annotation database for human.
Qi Pan, Yue-Juan Liu, Xue-Feng Bai, Xiao-Le Han, Yong Jiang, Xue-Cang Li, Chun-Quan Li

Nucleic Acids Res· January 2021

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Integrative Epigenomic Analysis of Transcriptional Regulation of Human CircRNAs.
Xue-Cang Li, Zhi-Dong Tang, Li Peng, Yan-Yu Li, Feng-Cui Qian, Ling-Wen Ding, Meng Li, Chun-Quan Li

Front Genet· January 2021

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TP63, SOX2, and KLF5 Establish a Core Regulatory Circuitry That Controls Epigenetic and Transcription Patterns in Esophageal Squamous Cell Carcinoma Cell Lines.
Yan-Yi Jiang, Yuan Jiang, Chun-Quan Li, Ying Zhang, Pushkar Dakle, Ruby Yu-Tong Lin, Lin Han, Liang Xu, YanYu Li, Melissa J Fullwood, De-Chen Lin, H Phillip Koeffler

Gastroenterology· October 2020

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Characterization of super-enhancer-associated functional lncRNAs acting as ceRNAs in ESCC.
Qiu-Yu Wang, Liu Peng, Yang Chen, Lian-Di Liao, Jia-Xin Chen, Meng Li, Yan-Yu Li, Chun-Quan Li, De-Chen Lin, Li-Yan Xu, En-Min Li

Mol Oncol· September 2020

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Identification of lncRNA-associated differential subnetworks in oesophageal squamous cell carcinoma by differential co-expression analysis.
Wei Liu, Cai-Yan Gan, Wei Wang, Lian-Di Liao, Chun-Quan Li, Li-Yan Xu, En-Min Li

J Cell Mol Med· April 2020

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LncRNA625 inhibits STAT1-mediated transactivation potential in esophageal cancer cells.
Huang Guo-Wei, Li Chun-Quan, Liao Lian-Di, Jiao Ji-Wei, Long Lin, Li En-Min, Xu Li-Yan

Int J Biochem Cell Biol· December 2019

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SEanalysis: a web tool for super-enhancer associated regulatory analysis.
Feng-Cui Qian, Xue-Cang Li, Jin-Cheng Guo, Jian-Mei Zhao, Yan-Yu Li, Li-Wei Zhou, En-Min Li, Chun-Quan Li, Li-Yan Xu, De-Chen Lin

Nucleic Acids Res· July 2019

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Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression.
Yuan Jiang, Yan-Yi Jiang, Jian-Jun Xie, Anand Mayakonda, Masaharu Hazawa, Li Chen, Chun-Quan Li, Mo-Li Huang, Ling-Wen Ding, Liang Xu, Lian-Di Liao, Li-Yan Xu, En-Min Li, De-Chen Lin, H Phillip Koeffler

Nat Commun· September 2018

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Super-Enhancer-Driven Long Non-Coding RNA LINC01503, Regulated by TP63, Is Over-Expressed and Oncogenic in Squamous Cell Carcinoma.
Jian-Jun Xie, Yan-Yi Jiang, Yuan Jiang, Chun-Quan Li, Mei-Chee Lim, Ling-Wen Ding, Lin Long, Le-Hang Lin, Li Chen, Melissa Fullwood, Li-Yan Xu, En-Min Li, De-Chen Lin, H Phillip Koeffler

Gastroenterology· June 2018

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MASAN: a novel staging system for prognosis of patients with oesophageal squamous cell carcinoma.
Wei Liu, Jian-Zhong He, Shao-Hong Wang, De-Kai Liu, Xue-Feng Bai, Chun-Quan Li, En-Min Li, Li-Yan Xu

Br J Cancer· May 2018

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A three-lncRNA signature predicts overall survival and disease-free survival in patients with esophageal squamous cell carcinoma.
Guo-Wei Huang, Yu-Jie Xue, Zhi-Yong Wu, Xiu-E Xu, Jian-Yi Wu, Chun-Quan Li, En-Min Li, Li-Yan Xu

BMC Cancer· February 2018

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A three-gene signature from protein-protein interaction network of LOXL2- and actin-related proteins for esophageal squamous cell carcinoma prognosis.
Xiu-Hui Zhan, Ji-Wei Jiao, Hai-Feng Zhang, Chun-Quan Li, Jian-Mei Zhao, Lian-di Liao, Bing-Li Wu, Li-Yan Xu, En-Min Li

Cancer Med· July 2017

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Protein-coding genes combined with long non-coding RNAs predict prognosis in esophageal squamous cell carcinoma patients as a novel clinical multi-dimensional signature.
Jin-Cheng Guo, Chun-Quan Li, Qiu-Yu Wang, Jian-Mei Zhao, Ji-Yu Ding, En-Min Li, Li-Yan Xu

Mol Biosyst· October 2016

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A truncated splice variant of human lysyl oxidase-like 2 promotes migration and invasion in esophageal squamous cell carcinoma.
Hai-Ying Zou, Guo-Qing Lv, Li-Hua Dai, Xiu-Hui Zhan, Ji-Wei Jiao, Lian-Di Liao, Chun-Quan Li, Bing-Li Wu, Li-Yan Xu, En-Min Li

Int J Biochem Cell Biol· June 2016

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The algebraic characterizations for a formal power series over complete strong bimonoids.
Jian Hua Jin, Chun Quan Li

Springerplus· April 2016

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Construction and analysis of cardiac hypertrophy-associated lncRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in cardiac hypertrophy.
Chao Song, Jian Zhang, Yan Liu, Hao Pan, Han-Ping Qi, Shang Li, Hong-Li Sun, Chun-Quan Li

Oncotarget· March 2016

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