Publications by authors named "Clay Deming"

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Trichophyton concentricum fungal infections and skin microbiomes of Indigenous Peninsular Malaysians.
Yi Xian Er, Soo Ching Lee, Chioma Aneke, Sean Conlan, Azdayanti Muslim, Clay Deming

Cell· August 2025

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Restoration of the human skin microbiome following immune recovery after hematopoietic stem cell transplantation.
You Che, Jungmin Han, Catriona P Harkins, Peng Hou, Sean Conlan, Clay Deming

Cell Host Microbe· August 2025

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Metabolism and Growth Preferences in Physiologically Relevant Skin-like Conditions.
Jonathan P Nicklas, Clay Deming, ShihQueen Lee-Lin, Sean Conlan, Zeyang Shen

bioRxiv· May 2025

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Acanthamoeba Infection in a Hematopoietic Cell Transplant Recipient: Challenges in Diagnosis, Management, and Source Identification.
Camellia T Banerjee, Sean Conlan, Anahita Mostaghim, Angela Michelin, Matthew Arduino, Clay Deming

Transpl Infect Dis· April 2025

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Clonal Candida auris and ESKAPE pathogens on the skin of residents of nursing homes.
Diana M Proctor, Sarah E Sansom, Clay Deming, Sean Conlan, Ryan A Blaustein

Nature· March 2025

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A genome catalog of the early-life human skin microbiome.
Zeyang Shen, Lukian Robert, Milan Stolpman, You Che, Katrina J Allen, Clay Deming

Genome Biol· November 2023

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Integrated genomic and functional analyses of human skin-associated reveal extensive inter- and intra-species diversity.
Payal Joglekar, Sean Conlan, Shih-Queen Lee-Lin, Clay Deming, Sara Saheb Kashaf

Proc Natl Acad Sci U S A· November 2023

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Integrated genomic and functional analyses of human skin-associated reveals extensive inter- and intra-species diversity.
Payal Joglekar, Sean Conlan, Shih-Queen Lee-Lin, Clay Deming, Sara Saheb Kashaf

bioRxiv· June 2023

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A genome catalog of the early-life human skin microbiome.
Zeyang Shen, Lukian Robert, Milan Stolpman, You Che, Audrey Walsh, Clay Deming

bioRxiv· May 2023

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Staphylococcal diversity in atopic dermatitis from an individual to a global scale.
Sara Saheb Kashaf, Catriona P Harkins, Clay Deming, Payal Joglekar, Sean Conlan

Cell Host Microbe· April 2023

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Long-term antibiotic exposure promotes mortality after systemic fungal infection by driving lymphocyte dysfunction and systemic escape of commensal bacteria.
Rebecca A Drummond, Jigar V Desai, Emily E Ricotta, Muthulekha Swamydas, Clay Deming

Cell Host Microbe· July 2022

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Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions.
Sara Saheb Kashaf, Diana M Proctor, Clay Deming, Paul Saary, Martin Hölzer

Nat Microbiol· January 2022

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Disruption of the endopeptidase ADAM10-Notch signaling axis leads to skin dysbiosis and innate lymphoid cell-mediated hair follicle destruction.
Keiko Sakamoto, Seon-Pil Jin, Shubham Goel, Jay-Hyun Jo, Benjamin Voisin, Clay Deming

Immunity· October 2021

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Integrated genomic, epidemiologic investigation of Candida auris skin colonization in a skilled nursing facility.
Diana M Proctor, Thelma Dangana, D Joseph Sexton, Christine Fukuda, Rachel D Yelin, Clay Deming

Nat Med· August 2021

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Skin Metagenomic Sequence Analysis of Early Candida auris Outbreaks in U.S. Nursing Homes.
Xin Huang, Rory M Welsh, Clay Deming, Diana M Proctor, Pamela J Thomas

mSphere· August 2021

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Preventing dysbiosis of the neonatal mouse intestinal microbiome protects against late-onset sepsis.
Jeffrey R Singer, Emily G Blosser, Carlene L Zindl, Daniel J Silberger, Sean Conlan, Clay Deming

Nat Med· November 2019

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Plasmid Dissemination and Selection of a Multidrug-Resistant Klebsiella pneumoniae Strain during Transplant-Associated Antibiotic Therapy.
Sean Conlan, Anna F Lau, Clay Deming, Christine D Spalding, ShihQueen Lee-Lin

mBio· October 2019

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Expanded skin virome in DOCK8-deficient patients.
Osnat Tirosh, Sean Conlan, Clay Deming, Shih-Queen Lee-Lin, Xin Huang

Nat Med· December 2018

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Investigation of a Cluster of Sphingomonas koreensis Infections.
Ryan C Johnson, Clay Deming, Sean Conlan, Caroline J Zellmer, Angela V Michelin

N Engl J Med· December 2018

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Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance.
Rebecca A Weingarten, Ryan C Johnson, Sean Conlan, Amanda M Ramsburg, John P Dekker, Clay Deming

mBio· February 2018

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Whole-Genome Sequencing Overrules a Suspected Case of Carbapenem-Resistant Enterobacter cloacae Transmission.
Mark Chen, Sean Conlan, Anna F Lau, John P Dekker, Clay Deming

J Clin Microbiol· September 2017

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and strain diversity underlying pediatric atopic dermatitis.
Allyson L Byrd, Clay Deming, Sara K B Cassidy, Oliver J Harrison, Weng-Ian Ng

Sci Transl Med· July 2017

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Diverse Human Skin Fungal Communities in Children Converge in Adulthood.
Jay-Hyun Jo, Clay Deming, Elizabeth A Kennedy, Sean Conlan, Eric C Polley

J Invest Dermatol· December 2016

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Colitis susceptibility in p47(phox-/-) mice is mediated by the microbiome.
E Liana Falcone, Loreto Abusleme, Muthulekha Swamydas, Michail S Lionakis, Li Ding, Clay Deming

Microbiome· April 2016

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Biogeography and individuality shape function in the human skin metagenome.
Julia Oh, Allyson L Byrd, Clay Deming, Sean Conlan,

Nature· October 2014

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