Publications by authors named "Cody L Hoop"

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Spectroscopic method for measuring activity of cis-aconitate decarboxylase, an important metabolic regulator of immune responses.
Kevin Knowlan, Cody L Hoop, Nadya I Tarasova

Anal Biochem· November 2025

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Novel GPU Engines for Virtual Screening of Giga-Sized Libraries Identify Inhibitors of Challenging Targets.
Eugene Raush, Maxim Totrov, Cody L Hoop, Kevin M Knowlan, Remington Bianchi

J Chem Inf Model· October 2025

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Nanoscale Structural and Functional Impacts of Disease-Associated Collagen Mutations.
Caitlyn A Tobita, Siddhartha Banerjee, Jonathan Roth, Emma K Larson, Abuzar Nikzad, Cody L Hoop

bioRxiv· September 2025

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Virtual screening of ultra-large chemical libraries identifies cell-permeable small-molecule inhibitors of a "non-druggable" target, STAT3 N-terminal domain.
Pedro Andrade Bonilla, Cody L Hoop, Karen Stefanisko, Sergey G Tarasov, Sourav Sinha

Front Oncol· April 2023

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Probing the effect of glycosaminoglycan depletion on integrin interactions with collagen I fibrils in the native extracellular matrix environment.
Jonathan Roth, Cody L Hoop, Jonathan K Williams, Robert Hayes, Jean Baum

Protein Sci· January 2023

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CD36-Binding Amphiphilic Nanoparticles for Attenuation of Alpha Synuclein-Induced Microglial Activation.
Nanxia Zhao, Nicola L Francis, Shuang Song, Vladyslav Kholodovych, Hannah R Calvelli, Cody L Hoop

Adv Nanobiomed Res· June 2022

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Molecular dynamics analysis of a flexible loop at the binding interface of the SARS-CoV-2 spike protein receptor-binding domain.
Jonathan K Williams, Baifan Wang, Andrew Sam, Cody L Hoop, David A Case

Proteins· May 2022

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DJ-1 Acts as a Scavenger of α-Synuclein Oligomers and Restores Monomeric Glycated α-Synuclein.
Tamr B Atieh, Jonathan Roth, Xue Yang, Cody L Hoop, Jean Baum

Biomolecules· October 2021

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NMR unveils an N-terminal interaction interface on acetylated-α-synuclein monomers for recruitment to fibrils.
Xue Yang, Baifan Wang, Cody L Hoop, Jonathan K Williams, Jean Baum

Proc Natl Acad Sci U S A· May 2021

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Collagen I Weakly Interacts with the β-Sheets of β-Microglobulin and Enhances Conformational Exchange To Induce Amyloid Formation.
Cody L Hoop, Jie Zhu, Shibani Bhattacharya, Caitlyn A Tobita, Sheena E Radford

J Am Chem Soc· January 2020

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PET-RAFT and SAXS: High Throughput Tools to Study Compactness and Flexibility of Single-Chain Polymer Nanoparticles.
Rahul Upadhya, N Sanjeeva Murthy, Cody L Hoop, Shashank Kosuri, Vikas Nanda

Macromolecules· November 2019

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Molecular underpinnings of integrin binding to collagen-mimetic peptides containing vascular Ehlers-Danlos syndrome-associated substitutions.
Cody L Hoop, Allysa P Kemraj, Baifan Wang, Sonal Gahlawat, Madison Godesky

J Biol Chem· September 2019

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Extracellular matrix components modulate different stages in β-microglobulin amyloid formation.
Núria Benseny-Cases, Theodoros K Karamanos, Cody L Hoop, Jean Baum, Sheena E Radford

J Biol Chem· June 2019

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Cryptic binding sites become accessible through surface reconstruction of the type I collagen fibril.
Jie Zhu, Cody L Hoop, David A Case, Jean Baum

Sci Rep· November 2018

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Revealing Accessibility of Cryptic Protein Binding Sites within the Functional Collagen Fibril.
Cody L Hoop, Jie Zhu, Ana Monica Nunes, David A Case, Jean Baum

Biomolecules· November 2017

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Backbone Engineering within a Latent β-Hairpin Structure to Design Inhibitors of Polyglutamine Amyloid Formation.
Karunakar Kar, Matthew A Baker, George A Lengyel, Cody L Hoop, Ravindra Kodali

J Mol Biol· January 2017

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Huntingtin exon 1 fibrils feature an interdigitated β-hairpin-based polyglutamine core.
Cody L Hoop, Hsiang-Kai Lin, Karunakar Kar, Gábor Magyarfalvi, Jonathan M Lamley

Proc Natl Acad Sci U S A· February 2016

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Structural Changes and Proapoptotic Peroxidase Activity of Cardiolipin-Bound Mitochondrial Cytochrome c.
Abhishek Mandal, Cody L Hoop, Maria DeLucia, Ravindra Kodali, Valerian E Kagan

Biophys J· November 2015

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Polyglutamine amyloid core boundaries and flanking domain dynamics in huntingtin fragment fibrils determined by solid-state nuclear magnetic resonance.
Cody L Hoop, Hsiang-Kai Lin, Karunakar Kar, Zhipeng Hou, Michelle A Poirier

Biochemistry· October 2014

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13C chemical-shift anisotropy of alkyl-substituted aromatic carbon in anthracene derivatives.
Cody L Hoop, Robbie J Iuliucci

Solid State Nucl Magn Reson· June 2013

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β-hairpin-mediated nucleation of polyglutamine amyloid formation.
Karunakar Kar, Cody L Hoop, Kenneth W Drombosky, Matthew A Baker, Ravindra Kodali

J Mol Biol· April 2013

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Serine phosphorylation suppresses huntingtin amyloid accumulation by altering protein aggregation properties.
Rakesh Mishra, Cody L Hoop, Ravindra Kodali, Bankanidhi Sahoo, Patrick C A van der Wel

J Mol Biol· November 2012

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Structural characterization of the caveolin scaffolding domain in association with cholesterol-rich membranes.
Cody L Hoop, V N Sivanandam, Ravindra Kodali, Matthew N Srnec, Patrick C A van der Wel

Biochemistry· January 2012

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Amyloid-like fibrils from a domain-swapping protein feature a parallel, in-register conformation without native-like interactions.
Jun Li, Cody L Hoop, Ravindra Kodali, V N Sivanandam, Patrick C A van der Wel

J Biol Chem· August 2011

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The aggregation-enhancing huntingtin N-terminus is helical in amyloid fibrils.
V N Sivanandam, Murali Jayaraman, Cody L Hoop, Ravindra Kodali, Ronald Wetzel

J Am Chem Soc· March 2011

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