Publications by authors named "Cody Martin"

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Systematic genome-wide mapping of host determinants of bacteriophage infectivity.
Chutikarn Chitboonthavisuk, Cody Martin, Phil Huss, Jason M Peters, Karthik Anantharaman

Cell Syst· November 2025

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Protein Set Transformer: a protein-based genome language model to power high-diversity viromics.
Cody Martin, Anthony Gitter, Karthik Anantharaman

Nat Commun· November 2025

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Phage N4 uses a SAR endolysin-holin system for host cell lysis.
Michael B Awuah, Cody Martin, Jake S Chamblee, Adam J Tomaszewski, Teresa E Sullivan

bioRxiv· November 2025

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A call for caution in the biological interpretation of viral auxiliary metabolic genes.
Cody Martin, Joanne B Emerson, Simon Roux, Karthik Anantharaman

Nat Microbiol· September 2025

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Protein Set Transformer: A protein-based genome language model to power high diversity viromics.
Cody Martin, Anthony Gitter, Karthik Anantharaman

bioRxiv· June 2025

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Endemism shapes viral ecology and evolution in globally distributed hydrothermal vent ecosystems.
Marguerite V Langwig, Faith Koester, Cody Martin, Zhichao Zhou, Samantha B Joye

Nat Commun· May 2025

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Genetic keys to microbial gut colonization.
Karthik Anantharaman, Cody Martin

Cell Host Microbe· May 2025

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Unravelling viral ecology and evolution over 20 years in a freshwater lake.
Zhichao Zhou, Patricia Q Tran, Cody Martin, Robin R Rohwer, Brett J Baker

Nat Microbiol· January 2025

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Prophage-DB: a comprehensive database to explore diversity, distribution, and ecology of prophages.
Etan Dieppa-Colón, Cody Martin, James C Kosmopoulos, Karthik Anantharaman

Environ Microbiome· January 2025

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zol and fai: large-scale targeted detection and evolutionary investigation of gene clusters.
Rauf Salamzade, Patricia Q Tran, Cody Martin, Abigail L Manson, Michael S Gilmore

Nucleic Acids Res· January 2025

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zol & fai: large-scale targeted detection and evolutionary investigation of gene clusters.
Rauf Salamzade, Patricia Q Tran, Cody Martin, Abigail L Manson, Michael S Gilmore

bioRxiv· September 2024

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Protein Set Transformer: A protein-based genome language model to power high diversity viromics.
Cody Martin, Anthony Gitter, Karthik Anantharaman

Res Sq· September 2024

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Prophage-DB: A comprehensive database to explore diversity, distribution, and ecology of prophages.
Etan Dieppa-Colón, Cody Martin, Karthik Anantharaman

bioRxiv· July 2024

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Systematic genome-wide discovery of host factors governing bacteriophage infectivity.
Chutikarn Chitboonthavisuk, Cody Martin, Phil Huss, Jason M Peters, Karthik Anantharaman

bioRxiv· April 2024

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Spatial and temporal control of lysis by the lambda holin.
Jesse Cahill, Ashley Holt, Matthew Theodore, Russell Moreland, Chandler O'Leary, Cody Martin

mBio· February 2024

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Evolutionary history and origins of Dsr-mediated sulfur oxidation.
Katherine M Klier, Cody Martin, Marguerite V Langwig, Karthik Anantharaman

ISME J· January 2024

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Methionine restriction-induced sulfur deficiency impairs antitumour immunity partially through gut microbiota.
Ming Ji, Xiaojiang Xu, Qing Xu, Yun-Chung Hsiao, Cody Martin

Nat Metab· September 2023

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ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomes.
Zhichao Zhou, Cody Martin, James C Kosmopoulos, Karthik Anantharaman

Imeta· August 2023

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Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates.
Daniel A Pensinger, Andrea T Fisher, Horia A Dobrila, William Van Treuren, Jackson O Gardner, Cody Martin

Infect Immun· February 2023

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ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomes.
Zhichao Zhou, Cody Martin, James C Kosmopoulos, Karthik Anantharaman

bioRxiv· February 2023

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Operating Room Fire During Total Knee Arthroplasty Tibial Impaction: A Case Report and Review of the Literature.
Olivia Leonovicz, Anna Cohen-Rosenblum, Cody Martin

Arthroplast Today· August 2022

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Complete Genome Sequence of Klebsiella pneumoniae Myophage Muenster.
Cody Martin, Lauren Lessor, James Clark, Tram Le, Jason J Gill

Microbiol Resour Announc· January 2021

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Phage-encoded cationic antimicrobial peptide required for lysis.
Ashley Holt, Jesse Cahill, Jolene Ramsey, Cody Martin, Chandler O'Leary

J Bacteriol· January 2021

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Intra-articular Corticosteroid Injections for Symptomatic Knee Osteoarthritis: What the Orthopaedic Provider Needs to Know.
Cody L Martin, James A Browne

J Am Acad Orthop Surg· September 2019

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Special Considerations for Mass Violence Events in Senior Living Facilities: A Case Report on the Pinelake Health and Rehab Center Shooting.
Cody Martin, David Powell

Disaster Med Public Health Prep· February 2017

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