Publications by authors named "Cody Ramirez"

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Protocol for retinal stress culture and single-cell analysis.
Jackie L Norrie, Cody Ramirez, Michael A Dyer

STAR Protoc· December 2025

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TEAD switches interacting partners along neural progenitor lineage progression to execute distinct functions.
Charles H Perry, Alfonso Lavado, Venkata Thulabandu, Cody Ramirez, Joshua Paré

Genes Dev· July 2025

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Schizophrenia-associated 22q11.2 deletion elevates striatal acetylcholine and disrupts thalamostriatal projections to produce amotivation in mice.
Mary H Patton, Brett J W Teubner, Kristen T Thomas, Sharon L Freshour, Alexandra J Trevisan, Cody A Ramirez

bioRxiv· June 2025

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Latent epigenetic programs in Müller glia contribute to stress and disease response in the retina.
Jackie L Norrie, Marybeth S Lupo, Danielle R Little, Abbas Shirinifard, Akhilesh Mishra, Cody Ramirez

Dev Cell· April 2025

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TEAD switches interacting partners along neural progenitor lineage progression to execute distinct functions.
Charles H Perry, Alfonso Lavado, Venkata Thulabandu, Cody Ramirez, Joshua Paré

bioRxiv· January 2025

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The transcriptomic landscape of spinal V1 interneurons reveals a role for En1 in specific elements of motor output.
Alexandra J Trevisan, Katie Han, Phillip Chapman, Anand S Kulkarni, Jennifer M Hinton, Cody Ramirez

bioRxiv· October 2024

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Neoantigen landscape supports feasibility of personalized cancer vaccine for follicular lymphoma.
Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix Frenkel

Blood Adv· August 2024

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Synaptic plasticity in human thalamocortical assembloids.
Mary H Patton, Kristen T Thomas, Ildar T Bayazitov, Kyle D Newman, Nathaniel B Kurtz, Cody A Ramirez

Cell Rep· August 2024

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Evolutionary conservation of VSX2 super-enhancer modules in retinal development.
Victoria Honnell, Shannon Sweeney, Jackie Norrie, Madison Parks, Cody Ramirez

Development· July 2024

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Synaptic plasticity in human thalamocortical assembloids.
Mary H Patton, Kristen T Thomas, Ildar T Bayazitov, Kyle D Newman, Nathaniel B Kurtz, Cody A Ramirez

bioRxiv· March 2024

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Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma.
Felicia Gomez, Bryan Fisk, Joshua F McMichael, Matthew Mosior, Jennifer A Foltz, Cody A Ramirez

Cancer Res Commun· November 2023

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Latent Epigenetic Programs in Müller Glia Contribute to Stress, Injury, and Disease Response in the Retina.
Jackie L Norrie, Marybeth Lupo, Abbas Shirinifard, Nadhir Djekidel, Cody Ramirez

bioRxiv· October 2023

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Identification of Evolutionarily Conserved VSX2 Enhancers in Retinal Development.
Victoria Honnell, Shannon Sweeney, Jackie Norrie, Cody Ramirez, Beisi Xu

bioRxiv· October 2023

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Mutations associated with progression in follicular lymphoma predict inferior outcomes at diagnosis: Alliance A151303.
David A Russler-Germain, Kilannin Krysiak, Cody Ramirez, Matthew Mosior, Marcus P Watkins

Blood Adv· September 2023

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Computational prediction of MHC anchor locations guides neoantigen identification and prioritization.
Huiming Xia, Joshua McMichael, Michelle Becker-Hapak, Onyinyechi C Onyeador, Rico Buchli, Cody A Ramirez

Sci Immunol· April 2023

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Identification of a modular super-enhancer in murine retinal development.
Victoria Honnell, Jackie L Norrie, Anand G Patel, Cody Ramirez, Jiakun Zhang

Nat Commun· January 2022

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Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples.
Erica K Barnell, Peter Ronning, Katie M Campbell, Kilannin Krysiak, Benjamin J Ainscough, Cody Ramirez

Genet Med· April 2019

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Safety and efficacy of a two-screw cephalomedullary nail for intertrochanteric femur fracture fixation: a retrospective case series in 264 patients.
Boris A Zelle, Antonio J Webb, Christopher Matson, Michael Morwood, Khang H Dang, Cody M Ramirez

Patient Saf Surg· November 2018

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Single-agent ibrutinib in relapsed or refractory follicular lymphoma: a phase 2 consortium trial.
Nancy L Bartlett, Brian A Costello, Betsy R LaPlant, Stephen M Ansell, John G Kuruvilla, Cody Ramirez

Blood· January 2018

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CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.
Malachi Griffith, Nicholas C Spies, Kilannin Krysiak, Joshua F McMichael, Adam C Coffman, Cody A Ramirez

Nat Genet· January 2017

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