Publications by authors named "Colin A Smith"

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Bridging data silos to holistically model plant macrophenology.
Lizbeth G Amador, Tadeo H Ramirez-Parada, Isaac W Park, Susan J Mazer, Aaron M Ellison, Colin A Smith

New Phytol· June 2025

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Deep learning-guided design of dynamic proteins.
Amy B Guo, Deniz Akpinaroglu, Christina A Stephens, Michael Grabe, Colin A Smith

Science· May 2025

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Analysis of chi angle distributions in free amino acids via multiplet fitting of proton scalar couplings.
Nabiha R Syed, Nafisa B Masud, Colin A Smith

Magn Reson (Gott)· August 2024

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Effects of Xylanase A double mutation on substrate specificity and structural dynamics.
Meagan E MacDonald, Nicholas G M Wells, Bakar A Hassan, Joshua A Dudley, Kylie J Walters, Colin A Smith

J Struct Biol· June 2024

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Heat-induced structural and chemical changes to a computationally designed miniprotein.
Joshua A Dudley, Sojeong Park, Oliver Cho, Nicholas G M Wells, Meagan E MacDonald, Colin A Smith

Protein Sci· June 2024

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Predicting binding affinity changes from long-distance mutations using molecular dynamics simulations and Rosetta.
Nicholas G M Wells, Colin A Smith

Proteins· July 2023

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Oxidation of Dueling Cysteine Promotes Subunit Exchange in SOD1.
Ao Yun Zhang, Chad M Dashnaw, Mayte Gonzalez, Jordan C Koone, Nick A Wells, Colin A Smith

ACS Chem Neurosci· April 2023

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Prediction of Fluorophore Brightness in Designed Mini Fluorescence Activating Proteins.
Emma R Hostetter, Jeffrey R Keyes, Ivy Poon, Justin P Nguyen, Jacob M Nite, Colin A Smith

J Chem Theory Comput· May 2022

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Free energy calculations of ALS-causing SOD1 mutants reveal common perturbations to stability and dynamics along the maturation pathway.
Nicholas G M Wells, Grant A Tillinghast, Alison L O'Neil, Colin A Smith

Protein Sci· September 2021

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Resolving overlapped signals with automated FitNMR analytical peak modeling.
Joshua A Dudley, Sojeong Park, Meagan E MacDonald, Emanual Fetene, Colin A Smith

J Magn Reson· September 2020

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Altered-specificity mutants of the HIV Rev arginine-rich motif-RRE IIB interaction.
Nicole G Raad, Ingrid R Ghattas, Ryo Amano, Natsuki Watanabe, Taiichi Sakamoto, Colin A Smith

J Mol Recognit· June 2020

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Enhancing NMR derived ensembles with kinetics on multiple timescales.
Colin A Smith, Adam Mazur, Ashok K Rout, Stefan Becker, Donghan Lee

J Biomol NMR· January 2020

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Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary N and H Relaxation Dispersion Techniques.
Petra Rovó, Colin A Smith, Diego Gauto, Bert L de Groot, Paul Schanda

J Am Chem Soc· January 2019

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Recent advances in measuring the kinetics of biomolecules by NMR relaxation dispersion spectroscopy.
David Ban, Colin A Smith, Bert L de Groot, Christian Griesinger, Donghan Lee

Arch Biochem Biophys· August 2017

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Personalised estimation of a woman's most fertile days.
Daniel Li, Leslie Heyer, Victoria H Jennings, Colin A Smith, David B Dunson

Eur J Contracept Reprod Health Care· August 2016

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A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design.
Shane Ó Conchúir, Kyle A Barlow, Roland A Pache, Noah Ollikainen, Kale Kundert, Colin A Smith

PLoS One· May 2016

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Dust Rains Deliver Diverse Assemblages of Microorganisms to the Eastern Mediterranean.
Ghida Nouhad Itani, Colin Andrew Smith

Sci Rep· March 2016

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Allosteric switch regulates protein-protein binding through collective motion.
Colin A Smith, David Ban, Supriya Pratihar, Karin Giller, Maria Paulat

Proc Natl Acad Sci U S A· March 2016

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Diverse mutants of HIV RRE IIB recognize wild-type Rev ARM or Rev ARM R35G-N40V.
Emane Y Abdallah, Colin A Smith

J Mol Recognit· December 2015

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HK022 Nun Requires Arginine-Rich Motif Residues Distinct from λ N.
Caroline S Tawk, Ingrid R Ghattas, Colin A Smith

J Bacteriol· November 2015

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Population shuffling of protein conformations.
Colin A Smith, David Ban, Supriya Pratihar, Karin Giller, Claudia Schwiegk

Angew Chem Int Ed Engl· January 2015

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ORIUM: optimized RDC-based Iterative and Unified Model-free analysis.
T Michael Sabo, Colin A Smith, David Ban, Adam Mazur, Donghan Lee

J Biomol NMR· April 2014

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Flexible backbone sampling methods to model and design protein alternative conformations.
Noah Ollikainen, Colin A Smith, James S Fraser, Tanja Kortemme

Methods Enzymol· August 2013

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Randomized codon mutagenesis reveals that the HIV Rev arginine-rich motif is robust to substitutions and that double substitution of two critical residues alters specificity.
Elite J Possik, Maroun S Bou Sleiman, Ingrid R Ghattas, Colin A Smith

J Mol Recognit· June 2013

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Design of a phosphorylatable PDZ domain with peptide-specific affinity changes.
Colin A Smith, Catherine A Shi, Matthew K Chroust, Thomas E Bliska, Mark J S Kelly

Structure· January 2013

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