Publications by authors named "Colin Diesh"

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Setting up JBrowse 2 for Visualizing Genome Synteny.
Colin Diesh, Garrett Stevens, Scott Cain, Lincoln Stein, Ian Holmes

Curr Protoc· December 2025

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Setting Up the JBrowse 2 Genome Browser.
Colin Diesh, Robert Buels, Garrett Stevens, Caroline Bridge, Scott Cain

Curr Protoc· August 2024

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JBrowse 2: a modular genome browser with views of synteny and structural variation.
Colin Diesh, Garrett J Stevens, Peter Xie, Teresa De Jesus Martinez, Elliot A Hershberg

Genome Biol· April 2023

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JBrowse Jupyter: a Python interface to JBrowse 2.
Teresa De Jesus Martinez, Elliot A Hershberg, Emma Guo, Garrett J Stevens, Colin Diesh

Bioinformatics· January 2023

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JBrowseR: an R interface to the JBrowse 2 genome browser.
Elliot A Hershberg, Garrett Stevens, Colin Diesh, Peter Xie, Teresa De Jesus Martinez

Bioinformatics· November 2021

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CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing.
Milovan Suvakov, Arijit Panda, Colin Diesh, Ian Holmes, Alexej Abyzov

Gigascience· November 2021

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Bovine Genome Database: new annotation tools for a new reference genome.
Md Shamimuzzaman, Justin J Le Tourneau, Deepak R Unni, Colin M Diesh, Deborah A Triant

Nucleic Acids Res· January 2020

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Cram-JS: reference-based decompression in node and the browser.
Robert Buels, Shihab Dider, Colin Diesh, James Robinson, Ian Holmes

Bioinformatics· November 2019

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Apollo: Democratizing genome annotation.
Nathan A Dunn, Deepak R Unni, Colin Diesh, Monica Munoz-Torres, Nomi L Harris

PLoS Comput Biol· February 2019

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WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.
Tim E Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin Diesh

Database (Oxford)· January 2017

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JBrowse: a dynamic web platform for genome visualization and analysis.
Robert Buels, Eric Yao, Colin M Diesh, Richard D Hayes, Monica Munoz-Torres

Genome Biol· April 2016

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Bovine Genome Database: new tools for gleaning function from the Bos taurus genome.
Christine G Elsik, Deepak R Unni, Colin M Diesh, Aditi Tayal, Marianne L Emery

Nucleic Acids Res· January 2016

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Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine.
Christine G Elsik, Aditi Tayal, Colin M Diesh, Deepak R Unni, Marianne L Emery

Nucleic Acids Res· January 2016

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