Publications by authors named "Colin Kern"

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MERFISH+, a large-scale, multi-omics spatial technology resolves the molecular holograms of the 3D human developing heart.
Colin Kern, Qingquan Zhang, Yifan Lu, Jacqueline Eschbach, Zehua Zeng

bioRxiv· November 2025

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A Multimodal Spatial and Epigenomic Atlas of Human Adult Lung Topography.
Thu Elizabeth Duong, Dinh Diep, Kimberly Y Conklin, Indy Bui, Jeffrey M Purkerson, Colin Kern

bioRxiv· May 2025

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Temporally distinct 3D multi-omic dynamics in the developing human brain.
Matthew G Heffel, Jingtian Zhou, Yi Zhang, Dong-Sung Lee, Kangcheng Hou, Colin Kern

Nature· November 2024

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Bento: a toolkit for subcellular analysis of spatial transcriptomics data.
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Colin Kern

Genome Biol· April 2024

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Spatially organized cellular communities form the developing human heart.
Elie N Farah, Robert K Hu, Colin Kern, Qingquan Zhang, Ting-Yu Lu

Nature· March 2024

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A comparative atlas of single-cell chromatin accessibility in the human brain.
Yang Eric Li, Sebastian Preissl, Michael Miller, Nicholas D Johnson, Zihan Wang, Colin Kern

Science· October 2023

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A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.
Bojing Blair Jia, Adam Jussila, Colin Kern, Quan Zhu, Bing Ren

Nat Biotechnol· July 2023

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Author Correction: A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.
Bojing Blair Jia, Adam Jussila, Colin Kern, Quan Zhu, Bing Ren

Nat Biotechnol· July 2023

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Fourth Report on Chicken Genes and Chromosomes 2022.
Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Colin Kern

Cytogenet Genome Res· January 2023

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Pig genome functional annotation enhances the biological interpretation of complex traits and human disease.
Zhangyuan Pan, Yuelin Yao, Hongwei Yin, Zexi Cai, Ying Wang, Colin Kern

Nat Commun· October 2021

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CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains.
Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern

Nat Genet· July 2021

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Tolerogenic Immunoregulation towards Salmonella Enteritidis Contributes to Colonization Persistence in Young Chicks.
Khin K Z Mon, Colin Kern, Ganrea Chanthavixay, Ying Wang, Huaijun Zhou

Infect Immun· July 2021

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Molecular Biology and Pathological Process of an Infectious Bronchitis Virus with Enteric Tropism in Commercial Broilers.
Ana P da Silva, Ruediger Hauck, Sabrina R C Nociti, Colin Kern, H L Shivaprasad

Viruses· July 2021

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Primary Chicken and Duck Endothelial Cells Display a Differential Response to Infection with Highly Pathogenic Avian Influenza Virus.
Zhen Wei Marcus Tong, Anjana C Karawita, Colin Kern, Huaijun Zhou, Jane E Sinclair

Genes (Basel)· June 2021

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Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research.
Colin Kern, Ying Wang, Xiaoqin Xu, Zhangyuan Pan, Michelle Halstead

Nat Commun· March 2021

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A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.
Michelle M Halstead, Colin Kern, Perot Saelao, Ying Wang, Ganrea Chanthavixay

BMC Genomics· October 2020

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Liver Transcriptome Responses to Heat Stress and Newcastle Disease Virus Infection in Genetically Distinct Chicken Inbred Lines.
Ying Wang, Perot Saelao, Colin Kern, Sihua Jin, Rodrigo A Gallardo

Genes (Basel)· September 2020

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Integrated Transcriptome and Histone Modification Analysis Reveals NDV Infection Under Heat Stress Affects Bursa Development and Proliferation in Susceptible Chicken Line.
Ganrea Chanthavixay, Colin Kern, Ying Wang, Perot Saelao, Susan J Lamont

Front Genet· September 2020

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Knockout of IRF7 Highlights its Modulator Function of Host Response Against Avian Influenza Virus and the Involvement of MAPK and TOR Signaling Pathways in Chicken.
Tae Hyun Kim, Colin Kern, Huaijun Zhou

Genes (Basel)· April 2020

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Transcript profiling of bovine embryos implicates specific transcription factors in the maternal-to-embryo transition.
Yanina S Bogliotti, Nhi Chung, Erika E Paulson, James Chitwood, Michelle Halstead, Colin Kern

Biol Reprod· March 2020

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Integrative analysis of gut microbiome and metabolites revealed novel mechanisms of intestinal Salmonella carriage in chicken.
Khin K Z Mon, Yuhua Zhu, Ganrea Chanthavixay, Colin Kern, Huaijun Zhou

Sci Rep· March 2020

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Functionally Annotating Regulatory Elements in the Equine Genome Using Histone Mark ChIP-Seq.
N B Kingsley, Colin Kern, Catherine Creppe, Erin N Hales, Huaijun Zhou

Genes (Basel)· December 2019

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Effects of Chicken MHC Haplotype on Resistance to Distantly Related Infectious Bronchitis Viruses.
Ana P da Silva, Rüdiger Hauck, Colin Kern, Ying Wang, Huaijun Zhou

Avian Dis· June 2019

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Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.
Colin Kern, Ying Wang, James Chitwood, Ian Korf, Mary Delany

BMC Genomics· September 2018

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Evolution of avian encephalomyelitis virus during embryo-adaptation.
Rüdiger Hauck, C Gabriel Sentíes-Cué, Ying Wang, Colin Kern, H L Shivaprasad

Vet Microbiol· May 2017

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