Publications by authors named "Colton Lloyd"

Claim this Profile
M
Metabolic growth-coupling strategies for enzyme selection systems.
Tobias B Alter, Pascal A Pieters, Colton J Lloyd, Adam M Feist, Emre Özdemir

Metab Eng Commun· June 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Diagnosis and mitigation of the systemic impact of genome reduction in DGF-298.
Antoine Champie, Jean-Christophe Lachance, Anand Sastry, Dominick Matteau, Colton J Lloyd

mBio· October 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Predicting stress response and improved protein overproduction in Bacillus subtilis.
Juan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, Colton Lloyd, Kevin Rychel

NPJ Syst Biol Appl· December 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets.
Omkar S Mohite, Colton J Lloyd, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson

Synth Syst Biotechnol· September 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genome-scale metabolic modeling reveals key features of a minimal gene set.
Jean-Christophe Lachance, Dominick Matteau, Joëlle Brodeur, Colton J Lloyd, Nathan Mih

Mol Syst Biol· July 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.
Colton J Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O Palsson

PLoS Comput Biol· June 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Reconstructing organisms in silico: genome-scale models and their emerging applications.
Xin Fang, Colton J Lloyd, Bernhard O Palsson

Nat Rev Microbiol· December 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
K
Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.
David Heckmann, Anaamika Campeau, Colton J Lloyd, Patrick V Phaneuf, Ying Hefner

Proc Natl Acad Sci U S A· September 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.
Bin Du, Laurence Yang, Colton J Lloyd, Xin Fang, Bernhard O Palsson

PLoS Comput Biol· December 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Cellular responses to reactive oxygen species are predicted from molecular mechanisms.
Laurence Yang, Nathan Mih, Amitesh Anand, Joon Ho Park, Justin Tan, Colton J Lloyd

Proc Natl Acad Sci U S A· July 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
B
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.
Jean-Christophe Lachance, Colton J Lloyd, Jonathan M Monk, Laurence Yang, Anand V Sastry

PLoS Comput Biol· April 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The genetic basis for adaptation of model-designed syntrophic co-cultures.
Colton J Lloyd, Zachary A King, Troy E Sandberg, Ying Hefner, Connor A Olson

PLoS Comput Biol· March 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen.
Joanne K Liu, Colton Lloyd, Mahmoud M Al-Bassam, Ali Ebrahim, Ji-Nu Kim

PLoS Comput Biol· March 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression.
Laurence Yang, Ali Ebrahim, Colton J Lloyd, Michael A Saunders, Bernhard O Palsson

BMC Syst Biol· January 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models.
David Heckmann, Colton J Lloyd, Nathan Mih, Yuanchi Ha, Daniel C Zielinski

Nat Commun· December 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
COBRAme: A computational framework for genome-scale models of metabolism and gene expression.
Colton J Lloyd, Ali Ebrahim, Laurence Yang, Zachary A King, Edward Catoiu

PLoS Comput Biol· July 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
iML1515, a knowledgebase that computes Escherichia coli traits.
Jonathan M Monk, Colton J Lloyd, Elizabeth Brunk, Nathan Mih, Anand Sastry

Nat Biotechnol· October 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Global transcriptional regulatory network for robustly connects gene expression to transcription factor activities.
Xin Fang, Anand Sastry, Nathan Mih, Donghyuk Kim, Justin Tan, Colton J Lloyd

Proc Natl Acad Sci U S A· September 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
L
Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies.
Troy E Sandberg, Colton J Lloyd, Bernhard O Palsson, Adam M Feist

Appl Environ Microbiol· July 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Principles of proteome allocation are revealed using proteomic data and genome-scale models.
Laurence Yang, James T Yurkovich, Colton J Lloyd, Ali Ebrahim, Michael A Saunders

Sci Rep· November 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
solveME: fast and reliable solution of nonlinear ME models.
Laurence Yang, Ding Ma, Ali Ebrahim, Colton J Lloyd, Michael A Saunders

BMC Bioinformatics· September 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
Next-generation genome-scale models for metabolic engineering.
Zachary A King, Colton J Lloyd, Adam M Feist, Bernhard O Palsson

Curr Opin Biotechnol· December 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.
Laurence Yang, Justin Tan, Edward J O'Brien, Jonathan M Monk, Donghyuk Kim, Colton J Lloyd

Proc Natl Acad Sci U S A· August 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis