Publications by authors named "Cong Pian"

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BroadAMP-GPT: AI-Driven generation of broad-spectrum antimicrobial peptides for combating multidrug-resistant ESKAPE pathogens.
Yanru Li, Xianghan Xu, Xiaohui Zhang, Zhihui Xu, Jiaqi Zhao, Cong Pian

Gut Microbes· December 2025

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Unveiling novel antimicrobial peptides from the ruminant gastrointestinal microbiomes: A deep learning-driven approach yields an anti-MRSA candidate.
Hong Shen, Yanru Li, Qingjie Pi, Junru Tian, Xianghan Xu, Cong Pian

J Adv Res· November 2025

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Design and optimization of novel succinate dehydrogenase inhibitors against agricultural fungi based on transformer model.
Yuan Zhang, Jianqi Chai, Ling Li, Wenqian Zhao, Jinwen Ji, Cong Pian

Mol Divers· August 2025

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Intraoperative Assessment of Parathyroidectomy Outcomes via Autoencoder-Support-Vector-Machine-Assisted Label-Free Differential SERS Spectroscopy.
Tian-Yu Qiu, Yan Ding, Yao-Yu Huang, Ming Zeng, Cui Li, Cong Pian

Nano Lett· July 2025

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On-site SERS analysis and intelligent multi-identification of fentanyl class substances by deep machine learning.
Qiao-Yan Jiang, Yuan Zhang, Yang Sun, Li-Xiang Wang, Zhengsheng Mao, Cong Pian

Spectrochim Acta A Mol Biomol Spectrosc· January 2025

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MMG4: Recognition of G4-Forming Sequences Based on Markov Model.
Boyuan Yu, Hao Zhang, Cong Pian, Yuanyuan Chen

J Comput Biol· December 2024

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Exploring Novel Fentanyl Analogues Using a Graph-Based Transformer Model.
Guangle Zhang, Yuan Zhang, Ling Li, Jiaying Zhou, Honglin Chen, Cong Pian

Interdiscip Sci· September 2024

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LRBmat: A novel gut microbial interaction and individual heterogeneity inference method for colorectal cancer.
Shan Tang, Shanjun Mao, Yangyang Chen, Falong Tan, Lihua Duan, Cong Pian

J Theor Biol· August 2023

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NcPath: a novel platform for visualization and enrichment analysis of human non-coding RNA and KEGG signaling pathways.
Zutan Li, Yuan Zhang, Jingya Fang, Zhihui Xu, Hao Zhang, Cong Pian

Bioinformatics· January 2023

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PlantBind: an attention-based multi-label neural network for predicting plant transcription factor binding sites.
Wenkai Yan, Zutan Li, Cong Pian, Yufeng Wu

Brief Bioinform· November 2022

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Predicting the structure of unexplored novel fentanyl analogues by deep learning model.
Yuan Zhang, Qiaoyan Jiang, Ling Li, Zutan Li, Zhihui Xu, Cong Pian

Brief Bioinform· November 2022

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MiRLoc: predicting miRNA subcellular localization by incorporating miRNA-mRNA interactions and mRNA subcellular localization.
Mingmin Xu, Yuanyuan Chen, Zhihui Xu, Liangyun Zhang, Hangjin Jiang, Cong Pian

Brief Bioinform· March 2022

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Adapt-Kcr: a novel deep learning framework for accurate prediction of lysine crotonylation sites based on learning embedding features and attention architecture.
Zutan Li, Jingya Fang, Shining Wang, Liangyun Zhang, Yuanyuan Chen, Cong Pian

Brief Bioinform· March 2022

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Pathway-Based Personalized Analysis of Pan-Cancer Transcriptomic Data.
Cong Pian, Mengyuan He, Yuanyuan Chen

Biomedicines· October 2021

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SPMLMI: predicting lncRNA-miRNA interactions in humans using a structural perturbation method.
Mingmin Xu, Yuanyuan Chen, Wei Lu, Lingpeng Kong, Jingya Fang, Cong Pian

PeerJ· May 2021

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Identifying RNA N6-Methyladenine Sites in Three Species Based on a Markov Model.
Cong Pian, Zhixin Yang, Yuqian Yang, Liangyun Zhang, Yuanyuan Chen

Front Genet· March 2021

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Deep6mA: A deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species.
Zutan Li, Hangjin Jiang, Lingpeng Kong, Yuanyuan Chen, Kun Lang, Cong Pian

PLoS Comput Biol· February 2021

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Mining influential genes based on deep learning.
Lingpeng Kong, Yuanyuan Chen, Fengjiao Xu, Mingmin Xu, Zutan Li, Cong Pian

BMC Bioinformatics· January 2021

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EpiMOGA: An Epistasis Detection Method Based on a Multi-Objective Genetic Algorithm.
Yuanyuan Chen, Fengjiao Xu, Cong Pian, Mingmin Xu, Lingpeng Kong

Genes (Basel)· January 2021

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Revealing Prognosis-Related Pathways at the Individual Level by a Comprehensive Analysis of Different Cancer Transcription Data.
Jingya Fang, Cong Pian, Mingmin Xu, Lingpeng Kong, Zutan Li

Genes (Basel)· October 2020

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SOMM4mC: a second-order Markov model for DNA N4-methylcytosine site prediction in six species.
Jiali Yang, Kun Lang, Guangle Zhang, Xiaodan Fan, Yuanyuan Chen, Cong Pian

Bioinformatics· August 2020

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Personalized analysis of breast cancer using sample-specific networks.
Ke Zhu, Cong Pian, Qiong Xiang, Xin Liu, Yuanyuan Chen

PeerJ· May 2020

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Discovering Cancer-Related miRNAs from miRNA-Target Interactions by Support Vector Machines.
Cong Pian, Shanjun Mao, Guangle Zhang, Jin Du, Fei Li

Mol Ther Nucleic Acids· March 2020

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MM-6mAPred: identifying DNA N6-methyladenine sites based on Markov model.
Cong Pian, Guangle Zhang, Fei Li, Xiaodan Fan

Bioinformatics· January 2020

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LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs.
Cong Pian, Guangle Zhang, Tengfei Tu, Xiangyu Ma, Fei Li

Database (Oxford)· January 2019

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