Publications by authors named "Constantin Ammar"

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Decoding adult murine pancreatic islet cell diversity through cell type-resolved proteomics and phosphoproteomics.
Marvin Thielert, Adrian Villalba, Vincenth Brennsteiner, Maria Wahle, Constantin Ammar

Commun Biol· October 2025

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AlphaDIA enables DIA transfer learning for feature-free proteomics.
Georg Wallmann, Patricia Skowronek, Vincenth Brennsteiner, Mikhail Lebedev, Marvin Thielert, Constantin Ammar

Nat Biotechnol· October 2025

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Survival dynamics of starving bacteria are determined by ion homeostasis that maintains plasmolysis.
Severin Schink, Mark Polk, Edward Athaide, Avik Mukherjee, Constantin Ammar

Nat Phys· August 2024

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AlphaPept: a modern and open framework for MS-based proteomics.
Maximilian T Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar

Nat Commun· March 2024

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Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome.
Florian A Rosenberger, Marvin Thielert, Maximilian T Strauss, Lisa Schweizer, Constantin Ammar

Nat Methods· October 2023

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Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel.
Marvin Thielert, Ericka Cm Itang, Constantin Ammar, Florian A Rosenberger, Isabell Bludau

Mol Syst Biol· September 2023

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Accurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes.
Constantin Ammar, Julia Patricia Schessner, Sander Willems, André C Michaelis, Matthias Mann

Mol Cell Proteomics· July 2023

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Analysis of proteome adaptation reveals a key role of the bacterial envelope in starvation survival.
Severin Schink, Constantin Ammar, Yu-Fang Chang, Ralf Zimmer, Markus Basan

Mol Syst Biol· December 2022

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AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics.
Wen-Feng Zeng, Xie-Xuan Zhou, Sander Willems, Constantin Ammar, Maria Wahle

Nat Commun· November 2022

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The Amino Acid Homoarginine Inhibits Atherogenesis by Modulating T-Cell Function.
Katrin Nitz, Michael Lacy, Mariaelvy Bianchini, Kanin Wichapong, Irem Avcilar Kücükgöze, Constantin Ammar

Circ Res· September 2022

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Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation.
Andreas-David Brunner, Marvin Thielert, Catherine Vasilopoulou, Constantin Ammar, Fabian Coscia

Mol Syst Biol· March 2022

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MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins.
Constantin Ammar, Markus Gruber, Gergely Csaba, Ralf Zimmer

Mol Cell Proteomics· September 2019

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Death Rate of E. coli during Starvation Is Set by Maintenance Cost and Biomass Recycling.
Severin J Schink, Elena Biselli, Constantin Ammar, Ulrich Gerland

Cell Syst· July 2019

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Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets.
Constantin Ammar, Evi Berchtold, Gergely Csaba, Andreas Schmidt, Axel Imhof

J Proteome Res· April 2019

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