Publications by authors named "Craig G Simpson"

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Hormonal and transcriptomic regulation of drought adaptation in barley roots and leaves.
Anna Collin, Magdalena Pacwa-Plociniczak, Tomasz Plociniczak, Ôndrej Novak, Marek Marzec, Craig G Simpson

Sci Rep· May 2025

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The cap-binding complex modulates ABA-responsive transcript splicing during germination in barley (Hordeum vulgare).
Ewa Sybilska, Anna Collin, Bahareh Sadat Haddadi, Luis A J Mur, Manfred Beckmann, Craig G Simpson

Sci Rep· August 2024

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Screening of NIAS World Rice Core Collection for Seeds with Long Longevity as Useful Potential Breeding Materials Focusing on the Stability of Embryonic RNAs.
Kalimullah Saighani, Megumi Kashiwagi, Safiullah Habibi, Craig G Simpson, Tetsuya Yamada

Plants (Basel)· July 2024

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EORNA, a barley gene and transcript abundance database.
Linda Milne, Micha Bayer, Paulo Rapazote-Flores, Claus-Dieter Mayer, Robbie Waugh, Craig G Simpson

Sci Data· March 2021

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Nonsense-Mediated RNA Decay Factor UPF1 Is Critical for Posttranscriptional and Translational Gene Regulation in Arabidopsis.
Vivek K Raxwal, Craig G Simpson, Jiradet Gloggnitzer, Juan Carlos Entinze, Wenbin Guo

Plant Cell· September 2020

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Editorial: Alternative Splicing Regulation in Plants.
Ezequiel Petrillo, Maria Kalyna, Kranthi K Mandadi, Shih-Long Tu, Craig G Simpson

Front Plant Sci· July 2020

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The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.
Katarzyna Dorota Raczynska, Agata Stepien, Daniel Kierzkowski, Malgorzata Kalak, Mateusz Bajczyk, Craig G Simpson

Nucleic Acids Res· February 2020

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BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.
Paulo Rapazote-Flores, Micha Bayer, Linda Milne, Claus-Dieter Mayer, John Fuller, Craig G Simpson

BMC Genomics· December 2019

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High-Resolution RT-PCR Analysis of Alternative Barley Transcripts.
Craig G Simpson, John Fuller, Paulo Rapazote-Flores, Claus-Dieter Mayer, Cristiane P G Calixto

Methods Mol Biol· June 2019

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Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening.
Christine A Hackett, Linda Milne, Kay Smith, Pete Hedley, Jenny Morris, Craig G Simpson

BMC Genet· August 2018

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How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).
Allan B James, Cristiane P G Calixto, Nikoleta A Tzioutziou, Wenbin Guo, Runxuan Zhang, Craig G Simpson

Plant Cell Environ· July 2018

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Alternative Splicing of Barley Clock Genes in Response to Low Temperature.
Cristiane P G Calixto, Craig G Simpson, Robbie Waugh, John W S Brown

PLoS One· June 2017

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Mapping and expression of genes associated with raspberry fruit ripening and softening.
Craig G Simpson, Danny W Cullen, Christine A Hackett, Kay Smith, Paul D Hallett

Theor Appl Genet· March 2017

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Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes.
Craig G Simpson, John Fuller, Cristiane P G Calixto, Jim McNicol, Clare Booth

Methods Mol Biol· November 2016

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The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability.
Raquel F Carvalho, Dóra Szakonyi, Craig G Simpson, Inês C R Barbosa, John W S Brown

Plant Cell· August 2016

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AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Runxuan Zhang, Cristiane P G Calixto, Nikoleta A Tzioutziou, Allan B James, Craig G Simpson

New Phytol· October 2015

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Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts.
John W S Brown, Craig G Simpson, Yamile Marquez, Geoffrey M Gadd, Andrea Barta

Plant Cell· August 2015

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The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms.
Rubén Gustavo Schlaen, Estefanía Mancini, Sabrina Elena Sanchez, Soledad Perez-Santángelo, Matías L Rugnone, Craig G Simpson

Proc Natl Acad Sci U S A· July 2015

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Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially.
Craig G Simpson, Dominika Lewandowska, Michele Liney, Diane Davidson, Sean Chapman

New Phytol· July 2014

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Long noncoding RNA modulates alternative splicing regulators in Arabidopsis.
Florian Bardou, Federico Ariel, Craig G Simpson, Natali Romero-Barrios, Philippe Laporte

Dev Cell· July 2014

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Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature.
Robert D Hancock, Wayne L Morris, Laurence J M Ducreux, Jenny A Morris, Muhammad Usman, Craig G Simpson

Plant Cell Environ· February 2014

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The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.
Katarzyna Dorota Raczynska, Agata Stepien, Daniel Kierzkowski, Malgorzata Kalak, Mateusz Bajczyk, Craig G Simpson

Nucleic Acids Res· January 2014

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Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana.
Corinna Streitner, Craig G Simpson, Paul Shaw, Selahattin Danisman, John W S Brown

Plant Signal Behav· July 2013

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An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.
Corinna Streitner, Tino Köster, Craig G Simpson, Paul Shaw, Selahattin Danisman

Nucleic Acids Res· December 2012

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Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.
Matthew A Jones, Brian A Williams, Jim McNicol, Craig G Simpson, John W S Brown

Plant Cell· October 2012

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