Publications by authors named "Cuixiang Lin"

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ProteinFormer: protein subcellular localization based on bioimages and modified pre-trained transformer.
Xinyi An, Yixin Li, Huiping Liao, Wanqiang Chen, Guosheng Han, Cuixiang Lin

BMC Genomics· November 2025

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Grain shape in rice: a Genome-wide association study of the effector genes.
Nansheng Wang, Muhammad Ahmad Hassan, Kang Li, Kunneng Zhou, Quan Gan, Cuixiang Lin

BMC Plant Biol· October 2025

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LIMO-GCN: a linear model-integrated graph convolutional network for predicting Alzheimer disease genes.
Cui-Xiang Lin, Hong-Dong Li, Jianxin Wang

Brief Bioinform· November 2024

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Analysis of genome-wide association studies of low-temperature germination in Xian and Geng rice.
Kang Li, Muhammad Ahmad Hassan, Jinmeng Guo, Xueyu Zhao, Quan Gan, Cuixiang Lin

Front Plant Sci· August 2024

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Artificial intelligence approaches for molecular representation in drug response prediction.
Cui-Xiang Lin, Yuanfang Guan, Hong-Dong Li

Curr Opin Struct Biol· February 2024

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A Gene Set-Integrated Approach for Predicting Disease-Associated Genes.
Hong-Dong Li, Chao Deng, Xiao-Qi Zhang, Cui-Xiang Lin

IEEE/ACM Trans Comput Biol Bioinform· December 2023

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CellBRF: a feature selection method for single-cell clustering using cell balance and random forest.
Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li

Bioinformatics· June 2023

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Ca deficiency triggers panicle degeneration in rice mediated by Ca /H exchanger OsCAX1a.
Quan Gan, Fengshun Song, Chuanzhong Zhang, Zhongmin Han, Bin Teng, Cuixiang Lin

Plant Cell Environ· May 2023

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Computational approaches for detecting disease-associated alternative splicing events.
Jiashu Liu, Cui-Xiang Lin, Xiaoqi Zhang, Zongxuan Li, Wenkui Huang

Brief Bioinform· May 2023

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GTFtools: a software package for analyzing various features of gene models.
Hong-Dong Li, Cui-Xiang Lin, Jiantao Zheng

Bioinformatics· October 2022

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AlzCode: a platform for multiview analysis of genes related to Alzheimer's disease.
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Shannon Erhardt, Jun Wang

Bioinformatics· March 2022

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TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data.
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Yuanfang Guan, Jianxin Wang

Nucleic Acids Res· January 2022

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An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease.
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Weisheng Liu, Shannon Erhardt

Brief Bioinform· January 2022

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REBET: a method to determine the number of cell clusters based on batch effect removal.
Zhao-Yu Fang, Cui-Xiang Lin, Yun-Pei Xu, Hong-Dong Li, Qing-Song Xu

Brief Bioinform· November 2021

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RFCell: A Gene Selection Approach for scRNA-seq Clustering Based on Permutation and Random Forest.
Yuan Zhao, Zhao-Yu Fang, Cui-Xiang Lin, Chao Deng, Yun-Pei Xu

Front Genet· July 2021

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Intron Retention as a Mode for RNA-Seq Data Analysis.
Jian-Tao Zheng, Cui-Xiang Lin, Zhao-Yu Fang, Hong-Dong Li

Front Genet· July 2020

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