Publications by authors named "Cunliang Geng"

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Integrative Modeling in the Age of Machine Learning: A Summary of HADDOCK Strategies in CAPRI Rounds 47-55.
Victor Reys, Marco Giulini, Vlad Cojocaru, Anna Engel, Xiaotong Xu, Cunliang Geng

Proteins· December 2024

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Beyond Docker: Enhancing vantage6 with Kubernetes for Federated Learning.
Héctor Cadavid, Cunliang Geng

Stud Health Technol Inform· August 2024

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GameBus on FHIR.
Cunliang Geng, Alireza Khanshan, Pieter van Gorp

Stud Health Technol Inform· August 2024

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MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations.
Yong Jung, Cunliang Geng, Alexandre M J J Bonvin, Li C Xue, Vasant G Honavar

Biomolecules· January 2023

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DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.
Nicolas Renaud, Cunliang Geng, Sonja Georgievska, Francesco Ambrosetti, Lars Ridder

Nat Commun· December 2021

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An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.
Panagiotis I Koukos, Jorge Roel-Touris, Francesco Ambrosetti, Cunliang Geng, Jörg Schaarschmidt

Proteins· August 2020

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iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines.
Nicolas Renaud, Yong Jung, Vasant Honavar, Cunliang Geng, Alexandre M J J Bonvin

SoftwareX· April 2020

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iScore: a novel graph kernel-based function for scoring protein-protein docking models.
Cunliang Geng, Yong Jung, Nicolas Renaud, Vasant Honavar, Alexandre M J J Bonvin

Bioinformatics· January 2020

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Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Marc F Lensink, Guillaume Brysbaert, Nurul Nadzirin, Sameer Velankar, Raphaël A G Chaleil, Cunliang Geng

Proteins· December 2019

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Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.
Anna Vangone, Joerg Schaarschmidt, Panagiotis Koukos, Cunliang Geng, Nevia Citro

Bioinformatics· May 2019

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iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations.
Cunliang Geng, Anna Vangone, Gert E Folkers, Li C Xue, Alexandre M J J Bonvin

Proteins· February 2019

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Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.
Cunliang Geng, Siddarth Narasimhan, João P G L M Rodrigues, Alexandre M J J Bonvin

Methods Mol Biol· February 2018

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Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.
Zeynep Kurkcuoglu, Panagiotis I Koukos, Nevia Citro, Mikael E Trellet, J P G L M Rodrigues, Cunliang Geng

J Comput Aided Mol Des· January 2018

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Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes.
Cunliang Geng, Anna Vangone, Alexandre M J J Bonvin

Protein Eng Des Sel· August 2016

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Purification, cloning, characterization and essential amino acid residues analysis of a new ι-carrageenase from Cellulophaga sp. QY3.
Su Ma, Gaofei Duan, Wengang Chai, Cunliang Geng, Yulong Tan

PLoS One· February 2014

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N-glycoform diversity of cellobiohydrolase I from Penicillium decumbens and synergism of nonhydrolytic glycoform in cellulose degradation.
Le Gao, Feng Gao, Lushan Wang, Cunliang Geng, Lianli Chi

J Biol Chem· May 2012

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