Publications by authors named "Cyrus Chothia"

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Investigating Protein Structure and Evolution with SCOP2.
Antonina Andreeva, Dave Howorth, Cyrus Chothia, Eugene Kulesha, Alexey G Murzin

Curr Protoc Bioinformatics· March 2015

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Genome3D: exploiting structure to help users understand their sequences.
Tony E Lewis, Ian Sillitoe, Antonina Andreeva, Tom L Blundell, Daniel W A Buchan, Cyrus Chothia

Nucleic Acids Res· January 2015

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SCOP2 prototype: a new approach to protein structure mining.
Antonina Andreeva, Dave Howorth, Cyrus Chothia, Eugene Kulesha, Alexey G Murzin

Nucleic Acids Res· January 2014

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Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Tony E Lewis, Ian Sillitoe, Antonina Andreeva, Tom L Blundell, Daniel W A Buchan, Cyrus Chothia

Nucleic Acids Res· January 2013

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Evolution of oligomeric state through geometric coupling of protein interfaces.
Tina Perica, Cyrus Chothia, Sarah A Teichmann

Proc Natl Acad Sci U S A· May 2012

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SUPERFAMILY 1.75 including a domain-centric gene ontology method.
David A de Lima Morais, Hai Fang, Owen J L Rackham, Derek Wilson, Ralph Pethica, Cyrus Chothia

Nucleic Acids Res· January 2011

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Ubiquitin--molecular mechanisms for recognition of different structures.
Tina Perica, Cyrus Chothia

Curr Opin Struct Biol· June 2010

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Genomic and structural aspects of protein evolution.
Cyrus Chothia, Julian Gough

Biochem J· April 2009

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SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.
Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Cyrus Chothia

Nucleic Acids Res· January 2009

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Data growth and its impact on the SCOP database: new developments.
Antonina Andreeva, Dave Howorth, John-Marc Chandonia, Steven E Brenner, Tim J P Hubbard, Cyrus Chothia

Nucleic Acids Res· January 2008

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The selection of acceptable protein mutations.
Rajkumar Sasidharan, Cyrus Chothia

Proc Natl Acad Sci U S A· June 2007

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The SUPERFAMILY database in 2007: families and functions.
Derek Wilson, Martin Madera, Christine Vogel, Cyrus Chothia, Julian Gough

Nucleic Acids Res· January 2007

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The generation of new protein functions by the combination of domains.
Matthew Bashton, Cyrus Chothia

Structure· January 2007

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3D complex: a structural classification of protein complexes.
Emmanuel D Levy, Jose B Pereira-Leal, Cyrus Chothia, Sarah A Teichmann

PLoS Comput Biol· November 2006

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Divergence of interdomain geometry in two-domain proteins.
Jung-Hoon Han, Nicola Kerrison, Cyrus Chothia, Sarah A Teichmann

Structure· May 2006

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Protein family expansions and biological complexity.
Christine Vogel, Cyrus Chothia

PLoS Comput Biol· May 2006

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VH gene segments in the mouse and human genomes.
Bernard de Bono, Martin Madera, Cyrus Chothia

J Mol Biol· September 2004

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The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins.
Julian Gough, Cyrus Chothia

Structure· June 2004

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Structure, function and evolution of multidomain proteins.
Christine Vogel, Matthew Bashton, Nicola D Kerrison, Cyrus Chothia, Sarah A Teichmann

Curr Opin Struct Biol· April 2004

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SCOP database in 2004: refinements integrate structure and sequence family data.
Antonina Andreeva, Dave Howorth, Steven E Brenner, Tim J P Hubbard, Cyrus Chothia

Nucleic Acids Res· January 2004

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The SUPERFAMILY database in 2004: additions and improvements.
Martin Madera, Christine Vogel, Sarah K Kummerfeld, Cyrus Chothia, Julian Gough

Nucleic Acids Res· January 2004

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The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity.
Christine Vogel, Sarah A Teichmann, Cyrus Chothia

Development· December 2003

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Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes.
Bernard de Bono, Cyrus Chothia

Nucleic Acids Res· November 2003

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Evolution of the protein repertoire.
Cyrus Chothia, Julian Gough, Christine Vogel, Sarah A Teichmann

Science· June 2003

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Sequence conservation in families whose members have little or no sequence similarity: the four-helical cytokines and cytochromes.
Emma E Hill, Veronica Morea, Cyrus Chothia

J Mol Biol· September 2002

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