Publications by authors named "Daigo Okada"

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Outcomes of tyrosine kinase inhibitor monotherapy for advanced renal cell carcinoma arising in patients with kidney transplantation: comparison with sporadic and end-stage renal disease populations.
Nanaka Katsurayama, Hiroki Ishihara, Toshihito Hirai, Ayaka Saito, Daigo Okada

Clin Exp Nephrol· December 2025

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Opposite aging effects among cell subsets revealed in the human transcriptome and epigenome.
Daigo Okada

MicroPubl Biol· November 2025

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Systematic evaluation of the isolated effect of tissue environment on the transcriptome using a single-cell RNA-seq atlas dataset.
Daigo Okada, Jianshen Zhu, Kan Shota, Yuuki Nishimura, Kazuya Haraguchi

BMC Genomics· April 2025

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Outcomes of kidney transplantation in recipients with SARS-cov-2 infection: a 282-case single-center experience in Japan.
Eri Sekido, Kohei Unagami, Kazuya Omoto, Ken Arimura, Ikumi Moriyama, Daigo Okada

Clin Exp Nephrol· February 2025

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The opposite aging effect to single cell transcriptome profile among cell subsets.
Daigo Okada

Biogerontology· November 2024

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Identification of epistatic SNP combinations in rheumatoid arthritis using LAMPLINK and Japanese cohorts.
Mio Shibata, Aika Terada, Takahisa Kawaguchi, Yoichiro Kamatani, Daigo Okada

J Hum Genet· October 2024

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Application of a mathematical model to clarify the statistical characteristics of a pan-tissue DNA methylation clock.
Daigo Okada

Geroscience· April 2024

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The medical cost and outcome of desensitization protocol in kidney transplantation recipients with high immunological risks.
Ryoichi Maenosono, Kohei Unagami, Rikako Oki, Yuya Fujiwara, Taro Banno, Daigo Okada

Int J Urol· April 2024

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Plasma proteins as potential biomarkers of aging of single tissue and cell type.
Daigo Okada

Biogerontology· February 2024

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Data-driven detection of age-related arbitrary monotonic changes in single-cell gene expression distributions.
Jian Hao Cheng, Daigo Okada

PeerJ· February 2024

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Visualization of the landscape of the read alignment shape of ATAC-seq data using Hellinger distance metric.
Jian Hao Cheng, Cheng Zheng, Ryo Yamada, Daigo Okada

Genes Cells· January 2024

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Delving into gene-set multiplex networks facilitated by a k-nearest neighbor-based measure of similarity.
Cheng Zheng, Man Wang, Ryo Yamada, Daigo Okada

Comput Struct Biotechnol J· October 2023

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Bioinformatic Identification of Potential RNA Alterations on the Atrial Fibrillation Remodeling from Human Pulmonary Veins.
Wataru Igarashi, Daichi Takagi, Daigo Okada, Daiki Kobayashi, Miho Oka

Int J Mol Sci· June 2023

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Data-driven identification and classification of nonlinear aging patterns reveals the landscape of associations between DNA methylation and aging.
Daigo Okada, Jian Hao Cheng, Cheng Zheng, Tatsuro Kumaki, Ryo Yamada

Hum Genomics· February 2023

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Mathematical model for the relationship between single-cell and bulk gene expression to clarify the interpretation of bulk gene expression data.
Daigo Okada, Cheng Zheng, Jian Hao Cheng

Comput Struct Biotechnol J· September 2022

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Comparative Study of Transcriptome in the Hearts Isolated from Mice, Rats, and Humans.
Daigo Okada, Yosuke Okamoto, Toshiro Io, Miho Oka, Daiki Kobayashi

Biomolecules· June 2022

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Novel insight into the correlation between hernia orifice of cystocele and lower urinary tract function: a pilot study.
Takeya Kitta, Hirokazu Abe, Huang Ting-Wen, Masahiro Fujikawa, Minoru Nakazono, Daigo Okada

BMC Womens Health· May 2022

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Data-driven comparison of multiple high-dimensional single-cell expression profiles.
Daigo Okada, Jian Hao Cheng, Cheng Zheng, Ryo Yamada

J Hum Genet· April 2022

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Cell population-based framework of genetic epidemiology in the single-cell omics era.
Daigo Okada, Cheng Zheng, Jian Hao Cheng, Ryo Yamada

Bioessays· January 2022

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Recipient myeloperoxidase-producing cells regulate antibody-mediated acute versus chronic kidney allograft rejection.
Satoshi Miyairi, Daisuke Ueda, Takafumi Yagisawa, Daigo Okada, Karen S Keslar

JCI Insight· July 2021

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Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.
Daigo Okada, Naotoshi Nakamura, Kazuya Setoh, Takahisa Kawaguchi, Koichiro Higasa

J Hum Genet· June 2021

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Publisher Correction: Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.
Daigo Okada, Naotoshi Nakamura, Kazuya Setoh, Takahisa Kawaguchi, Koichiro Higasa

J Hum Genet· June 2021

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Interpretation of omics data analyses.
Ryo Yamada, Daigo Okada, Juan Wang, Tapati Basak, Satoshi Koyama

J Hum Genet· January 2021

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Red cell distribution width predicts time to recurrence in patients with primary non-muscle-invasive bladder cancer and improves the accuracy of the EORTC scoring system.
Wataru Fukuokaya, Takahiro Kimura, Jun Miki, Shoji Kimura, Hisaki Watanabe, Daigo Okada

Urol Oncol· July 2020

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Decomposition of a set of distributions in extended exponential family form for distinguishing multiple oligo-dimensional marker expression profiles of single-cell populations and visualizing their dynamics.
Daigo Okada, Ryo Yamada

PLoS One· July 2020

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