Publications by authors named "Damon May"

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HLA-A∗03:01 as predictive genetic biomarker for glatiramer acetate treatment response in multiple sclerosis: a retrospective cohort analysis.
Brian C Zhang, Tilman Schneider-Hohendorf, Rebecca Elyanow, Beatrice Pignolet, Simon Falk, Damon May

EBioMedicine· August 2025

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Antigen-driven expansion of public clonal T-cell populations in inflammatory bowel diseases.
Mitchell Pesesky, Ramit Bharanikumar, Lionel Le Bourhis, Hesham ElAbd, Elisa Rosati, Damon May

J Crohns Colitis· July 2025

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T and B cell responses against Epstein-Barr virus in primary sclerosing cholangitis.
Hesham ElAbd, Mitchell Pesesky, Gabriel Innocenti, Brian K Chung, Aya K H Mahdy, Gabriele Mayr, Damon H May

Nat Med· July 2025

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Magnitude and dynamics of the T-cell response to SARS-CoV-2 infection at both individual and population levels.
Thomas M Snyder, Rachel M Gittelman, Mark Klinger, Damon H May, Edward J Osborne

Front Immunol· May 2025

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A learned embedding for efficient joint analysis of millions of mass spectra.
Wout Bittremieux, Damon H May, Jeffrey Bilmes, William Stafford Noble

Nat Methods· June 2022

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T cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity.
Rebecca Elyanow, Thomas M Snyder, Sudeb C Dalai, Rachel M Gittelman, Jim Boonyaratanakornkit, Damon H May

JCI Insight· May 2022

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Magnitude and Dynamics of the T-Cell Response to SARS-CoV-2 Infection at Both Individual and Population Levels.
Thomas M Snyder, Rachel M Gittelman, Mark Klinger, Damon H May, Edward J Osborne

medRxiv· September 2020

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Gut Microbial Protein Expression in Response to Dietary Patterns in a Controlled Feeding Study: A Metaproteomic Approach.
Sheng Pan, Meredith A J Hullar, Lisa A Lai, Hong Peng, Damon H May

Microorganisms· March 2020

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Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes.
Molly P Mikan, H Rodger Harvey, Emma Timmins-Schiffman, Michael Riffle, Damon H May

ISME J· January 2020

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Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi.
Dasha Krayushkina, Emma Timmins-Schiffman, Jessica Faux, Damon H May, Michael Riffle

Sci Data· December 2019

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Detecting Modifications in Proteomics Experiments with Param-Medic.
Damon H May, Kaipo Tamura, William S Noble

J Proteome Res· April 2019

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Screening, large-scale production and structure-based classification of cystine-dense peptides.
Colin E Correnti, Mesfin M Gewe, Christopher Mehlin, Ashok D Bandaranayake, William A Johnsen, Damon May

Nat Struct Mol Biol· March 2018

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Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.
Clemens Blank, Caleb Easterly, Bjoern Gruening, James Johnson, Carolin A Kolmeder, Damon May

Proteomes· January 2018

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MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data.
Michael Riffle, Damon H May, Emma Timmins-Schiffman, Molly P Mikan, Daniel Jaschob

Proteomes· December 2017

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Param-Medic: A Tool for Improving MS/MS Database Search Yield by Optimizing Parameter Settings.
Damon H May, Kaipo Tamura, William S Noble

J Proteome Res· April 2017

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Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns.
Emma Timmins-Schiffman, Damon H May, Molly Mikan, Michael Riffle, Chris Frazar

ISME J· February 2017

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An Alignment-Free "Metapeptide" Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing.
Damon H May, Emma Timmins-Schiffman, Molly P Mikan, H Rodger Harvey, Elhanan Borenstein

J Proteome Res· August 2016

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Proteins associated with pancreatic cancer survival in patients with resectable pancreatic ductal adenocarcinoma.
Ru Chen, David W Dawson, Sheng Pan, Niki A Ottenhof, Roeland F de Wilde, Damon H May

Lab Invest· January 2015

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Quantitative glycoproteomics analysis reveals changes in N-glycosylation level associated with pancreatic ductal adenocarcinoma.
Sheng Pan, Ru Chen, Yasuko Tamura, David A Crispin, Lisa A Lai, Damon H May

J Proteome Res· March 2014

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Metabolomic profiling of urine: response to a randomised, controlled feeding study of select fruits and vegetables, and application to an observational study.
Damon H May, Sandi L Navarro, Ingo Ruczinski, Jason Hogan, Yuko Ogata

Br J Nutr· November 2013

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Statistical inference from multiple iTRAQ experiments without using common reference standards.
Shelley M Herbrich, Robert N Cole, Keith P West, Kerry Schulze, James D Yager, Damon H May

J Proteome Res· February 2013

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Large-scale quantitative glycoproteomics analysis of site-specific glycosylation occupancy.
Sheng Pan, Yasuko Tamura, Ru Chen, Damon May, Martin W McIntosh

Mol Biosyst· November 2012

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Extensive gene-specific translational reprogramming in a model of B cell differentiation and Abl-dependent transformation.
Jamie G Bates, Julia Salzman, Damon May, Patty B Garcia, Gregory J Hogan

PLoS One· October 2012

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Proteomics portrait of archival lesions of chronic pancreatitis.
Sheng Pan, Ru Chen, Tyler Stevens, Mary P Bronner, Damon May

PLoS One· April 2012

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