Publications by authors named "Dan Cullen"

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Transcriptomics of Temporal- versus Substrate-Specific Wood Decay in the Brown-Rot Fungus .
Byoungnam Min, Steven Ahrendt, Anna Lipzen, Cristina E Toapanta, Robert A Blanchette, Dan Cullen

J Fungi (Basel)· October 2023

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Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus ".
Baojun Wu, Jill Gaskell, Benjamin W Held, Cristina Toapanta, Thu V Vuong, Dan Cullen

Appl Environ Microbiol· July 2021

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Retraction for Wu et al., "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus ".
Baojun Wu, Jill Gaskell, Benjamin W Held, Cristina Toapanta, Thu Vuong, Dan Cullen

Appl Environ Microbiol· July 2021

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Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus.
Chiaki Hori, Naoki Takata, Pui Ying Lam, Yuki Tobimatsu, Soichiro Nagano, Dan Cullen

Sci Rep· December 2020

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Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes.
Chiaki Hori, Jill Gaskell, Dan Cullen, Grzegorz Sabat, Philip E Stewart

Appl Environ Microbiol· October 2018

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Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola.
Baojun Wu, Jill Gaskell, Benjamin W Held, Cristina Toapanta, Thu Vuong, Dan Cullen

Appl Environ Microbiol· August 2018

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Draft genome sequence of a monokaryotic model brown-rot fungus SB12.
Jill Gaskell, Phil Kersten, Luis F Larrondo, Paulo Canessa, Diego Martinez, Dan Cullen

Genom Data· December 2017

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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution.
László G Nagy, Robert Riley, Philip J Bergmann, Krisztina Krizsán, Francis M Martin, Dan Cullen

Mol Biol Evol· January 2017

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Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2.
Otto Miettinen, Robert Riley, Kerrie Barry, Dan Cullen, Ronald P de Vries

Genome Announc· September 2016

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Transcriptome and Secretome Analyses of the Wood Decay Fungus Wolfiporia cocos Support Alternative Mechanisms of Lignocellulose Conversion.
Jill Gaskell, Robert A Blanchette, Philip E Stewart, Sandra Splinter BonDurant, Marie Adams, Dan Cullen

Appl Environ Microbiol· July 2016

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Gene Expression Patterns of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium Are Influenced by Wood Substrate Composition during Degradation.
Oleksandr Skyba, Dan Cullen, Carl J Douglas, Shawn D Mansfield

Appl Environ Microbiol· July 2016

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Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood.
Premsagar Korripally, Christopher G Hunt, Carl J Houtman, Don C Jones, Peter J Kitin, Dan Cullen

Appl Environ Microbiol· November 2015

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Copper radical oxidases and related extracellular oxidoreductases of wood-decay Agaricomycetes.
Phil Kersten, Dan Cullen

Fungal Genet Biol· November 2014

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Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium.
Jill Gaskell, Amber Marty, Michael Mozuch, Philip J Kersten, Sandra Splinter BonDurant, Dan Cullen

Appl Environ Microbiol· September 2014

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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi.
Robert Riley, Asaf A Salamov, Daren W Brown, Laszlo G Nagy, Dimitrios Floudas, Dan Cullen

Proc Natl Acad Sci U S A· July 2014

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Temporal alterations in the secretome of the selective ligninolytic fungus Ceriporiopsis subvermispora during growth on aspen wood reveal this organism's strategy for degrading lignocellulose.
Chiaki Hori, Jill Gaskell, Kiyohiko Igarashi, Phil Kersten, Michael Mozuch, Dan Cullen

Appl Environ Microbiol· April 2014

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Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay.
Chiaki Hori, Jill Gaskell, Kiyohiko Igarashi, Masahiro Samejima, David Hibbett, Dan Cullen

Mycologia· January 2014

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A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus.
Harshavardhan Doddapaneni, Venkataramanan Subramanian, Bolei Fu, Dan Cullen

Fungal Genet Biol· June 2013

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Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.
Emmanuelle Morin, Annegret Kohler, Adam R Baker, Marie Foulongne-Oriol, Vincent Lombard, Dan Cullen

Proc Natl Acad Sci U S A· October 2012

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Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
Åke Olson, Andrea Aerts, Fred Asiegbu, Lassaad Belbahri, Ourdia Bouzid, Dan Cullen

New Phytol· June 2012

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The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.
Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A Blanchette, Dan Cullen

Science· June 2012

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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.
Elena Fernandez-Fueyo, Francisco J Ruiz-Dueñas, Patricia Ferreira, Dimitrios Floudas, David S Hibbett, Dan Cullen

Proc Natl Acad Sci U S A· April 2012

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The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.
Daniel C Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, Dan Cullen

Science· August 2011

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Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species.
Amber Vanden Wymelenberg, Jill Gaskell, Michael Mozuch, Sandra Splinter BonDurant, Grzegorz Sabat, Dan Cullen

Appl Environ Microbiol· July 2011

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Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.
Amber Vanden Wymelenberg, Jill Gaskell, Michael Mozuch, Grzegorz Sabat, John Ralph, Dan Cullen

Appl Environ Microbiol· June 2010

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