Publications by authors named "Daniel A Cuevas"

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Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome.
Lance Boling, Daniel A Cuevas, Juris A Grasis, Han Suh Kang, Ben Knowles

Gut Microbes· July 2020

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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.
Robert A Edwards, Alejandro A Vega, Holly M Norman, Maria Ohaeri, Kyle Levi, Daniel A Cuevas

Nat Microbiol· October 2019

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Growth Score: a single metric to define growth in 96-well phenotype assays.
Daniel A Cuevas, Robert A Edwards

PeerJ· April 2018

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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Daniel A Cuevas

Nat Methods· November 2017

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PMAnalyzer: a new web interface for bacterial growth curve analysis.
Daniel A Cuevas, Robert A Edwards

Bioinformatics· June 2017

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From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model.
Daniel A Cuevas, Janaka Edirisinghe, Chris S Henry, Ross Overbeek, Taylor G O'Connell

Front Microbiol· July 2016

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Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins.
Savannah E Sanchez, Daniel A Cuevas, Jason E Rostron, Tiffany Y Liang, Cullen G Pivaroff

J Vis Exp· June 2015

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Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition.
Yan Wei Lim, Daniel A Cuevas, Genivaldo Gueiros Z Silva, Kristen Aguinaldo, Elizabeth A Dinsdale

PeerJ· September 2014

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FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares.
Genivaldo Gueiros Z Silva, Daniel A Cuevas, Bas E Dutilh, Robert A Edwards

PeerJ· June 2014

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