Publications by authors named "Daniel Cetnar"

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An autonomous microbial sensor enables long-term detection of TNT explosive in natural soil.
Erin A Essington, Grace E Vezeau, Daniel P Cetnar, Emily Grandinette, Terrence H Bell

Nat Commun· December 2024

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Automated Design of Oligopools and Rapid Analysis of Massively Parallel Barcoded Measurements.
Ayaan Hossain, Daniel P Cetnar, Travis L LaFleur, James R McLellan, Howard M Salis

ACS Synth Biol· December 2024

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Predicting synthetic mRNA stability using massively parallel kinetic measurements, biophysical modeling, and machine learning.
Daniel P Cetnar, Ayaan Hossain, Grace E Vezeau, Howard M Salis

Nat Commun· November 2024

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Surrogate model to screen for inactivation-based clearance of enveloped viruses during biotherapeutics process development.
Hasin Feroz, Daniel Cetnar, Robert Hewlett, Satish Sharma, Melissa Holstein

Biotechnol J· December 2021

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Systematic Quantification of Sequence and Structural Determinants Controlling mRNA stability in Bacterial Operons.
Daniel P Cetnar, Howard M Salis

ACS Synth Biol· February 2021

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Automated design of thousands of nonrepetitive parts for engineering stable genetic systems.
Ayaan Hossain, Eriberto Lopez, Sean M Halper, Daniel P Cetnar, Alexander C Reis

Nat Biotechnol· December 2020

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Simultaneous repression of multiple bacterial genes using nonrepetitive extra-long sgRNA arrays.
Alexander C Reis, Sean M Halper, Grace E Vezeau, Daniel P Cetnar, Ayaan Hossain

Nat Biotechnol· November 2019

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An Automated Pipeline for Engineering Many-Enzyme Pathways: Computational Sequence Design, Pathway Expression-Flux Mapping, and Scalable Pathway Optimization.
Sean M Halper, Daniel P Cetnar, Howard M Salis

Methods Mol Biol· July 2018

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Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences.
Amin Espah Borujeni, Daniel Cetnar, Iman Farasat, Ashlee Smith, Natasha Lundgren

Nucleic Acids Res· May 2017

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Thermodynamics of the Electron Acceptors in Heliobacterium modesticaldum: An Exemplar of an Early Homodimeric Type I Photosynthetic Reaction Center.
Bryan Ferlez, John Cowgill, Weibing Dong, Christopher Gisriel, Su Lin, Daniel Cetnar

Biochemistry· April 2016

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