Publications by authors named "Daniel Cook"

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Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers.
Camille A Daniels, Adetola A Abdulkadir, Megan H Cleveland, Jennifer H McDaniel, David Jáspez, Daniel Cook

Cell Genom· December 2025

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ancestral genomic hyper-diversity contrasts with globally distributed genome-wide haplotypes.
Nicolas D Moya, Bowen Wang, Robyn E Tanny, Michael E G Sauria, Lance M O'Connor, Daniel E Cook

bioRxiv· December 2025

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An Evaluation of the Toxic Norditerpenoid Alkaloid Content Across Delphinium Species, and Their Acute Toxicities in a Murine Model.
Kevin D Welch, Dale R Gardner, Daniel Cook, Stephen T Lee, Clint A Stonecipher

Chem Biodivers· October 2025

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Behavioral and Sociodemographic Determinants of Influenza Vaccination Among Caregivers During the COVID-19 Pandemic.
Danika M Williams, Ann M Weber, Daniel M Cook, Minggen Lu, Wei Yang

Am J Health Promot· October 2025

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In mechanically ventilated, critically ill adults, conservative vs. usual supplemental oxygen did not reduce mortality at 90 d.
Daniel P Cook,

Ann Intern Med· October 2025

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Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic.
Jimin Park, Daniel E Cook, Pi-Chuan Chang, Alexey Kolesnikov, Lucas Brambrink

Nat Biotechnol· October 2025

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Oxalate nephropathy in cattle associated with the consumption of in Argentina.
Agustín Avellaneda-Cáceres, Stephen T Lee, Álvaro Ruiz, Gabriela V Sandoval, Luis A Colque-Caro, Daniel Cook

J Vet Diagn Invest· September 2025

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PGI2 signaling metabolically reprograms CD4 Th2 cells and represses allergic airway inflammation.
Weisong Zhou, Jian Zhang, Nowrin U Chowdhury, Allison E Norlander, Shinji Toki, Daniel P Cook

J Immunol· September 2025

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PGI2 restricts trained ILC2 responses in allergic inflammation.
Weisong Zhou, Jian Zhang, Allison E Norlander, Daniel P Cook, Shinji Toki

J Immunol· July 2025

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Highly accurate assembly polishing with DeepPolisher.
Mira Mastoras, Mobin Asri, Lucas Brambrink, Prajna Hebbar, Alexey Kolesnikov, Daniel E Cook

Genome Res· July 2025

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Accurate human genome analysis with element avidity sequencing.
Andrew Carroll, Alexey Kolesnikov, Daniel E Cook, Lucas Brambrink, Kelly N Wiseman

BMC Bioinformatics· July 2025

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Is hemp () safe to feed pregnant sheep?
Benedict T Green, Dale R Gardner, Clinton A Stonecipher, Kevin D Welch, Stephen T Lee, Daniel Cook

Transl Anim Sci· July 2025

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Morphological and Phylogenetic Characterization of Section Fungal Endophytes from and spp.
Marwa Neyaz, Olabisi Adebisi, Daniel Cook, Rebecca Creamer

J Fungi (Basel)· July 2025

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Pangenome-aware DeepVariant.
Mobin Asri, Pi-Chuan Chang, Juan Carlos Mier, Jouni Sirén, Parsa Eskandar, Daniel E Cook

bioRxiv· June 2025

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Smoking and Risks Contributing to COVID-19 Hospitalization in Washoe County, Nevada, 2020-2021.
Danika M Williams, Minggen Lu, Ann M Weber, Daniel M Cook, Lingchen Wang

J Public Health Manag Pract· May 2025

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CFTR negatively reprograms Th2 cell responses, and CFTR potentiation restrains allergic airway inflammation.
Mark Rusznak, Christopher M Thomas, Jian Zhang, Shinji Toki, Weisong Zhou, Daniel P Cook

JCI Insight· May 2025

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The cross-sectional association between state-level public health funding per capita and physical health among adults in the United States.
Stephen Hunter, Sze Y Liu, Daniel M Cook, Kia L Davis, Brendan T Smith

PLoS One· May 2025

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Senecio pampeanus poisoning in beef cattle: case report and toxicological evaluation.
María Florencia Ovelar, Juan Agustín García, Daniel Cook, Dale Gardner, Bryan Stegelmeier

Vet Res Commun· May 2025

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Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing.
Ayse G Keskus, Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Daniel E Cook

Nat Biotechnol· April 2025

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Paving the physician-scientist career path: from grassroots gathering to national forum.
Kyu Y Rhee, Charles W Emala, Emily Jane Gallagher, Don C Rockey, Patrick J Hu, Daniel P Cook

JCI Insight· April 2025

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Intoxication of sheep by in northwestern Argentina.
Raul E Marin, Dale Gardner, Daniel Cook, Anibal G Armien, Renée H Fortunato

J Vet Diagn Invest· March 2025

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DNA data (genome skims and metabarcodes) paired with chemical data demonstrate utility for retrospective analysis of forage linked to fatal poisoning of cattle.
Daniel Cook, Brandon Kocurek, Clint Stonecipher, Kevin D Welch, Dale R Gardner

Toxicon· March 2025

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Clonal driver neoantigen loss under EGFR TKI and immune selection pressures.
Maise Al Bakir, James L Reading, Samuel Gamble, Rachel Rosenthal, Imran Uddin, Daniel E Cook

Nature· March 2025

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The Cystic Fibrosis Transmembrane Conductance Receptor Brakes Allergic Airway Inflammation.
Daniel P Cook, R Stokes Peebles

Immunol Rev· March 2025

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A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material.
Camille A Daniels, Adetola Abdulkadir, Megan H Cleveland, Jennifer H McDaniel, David Jáspez, Daniel Cook

bioRxiv· December 2024

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