Publications by authors named "Daniel Gatti"

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Low-coverage whole-genome sequencing facilitates accurate and cost-effective haplotype reconstruction in complex mouse crosses.
Samuel J Widmayer, Lydia K Wooldridge, Emily Swanzey, Mary Barter, Chrystal Snow, Daniel M Gatti

Mamm Genome· December 2025

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Analysis of lifespan across diversity outbred mouse studies identifies multiple longevity-associated loci.
Martin N Mullis, Kevin M Wright, Anil Raj, Daniel M Gatti, Peter C Reifsnyder

Genetics· August 2025

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Analysis of lifespan across Diversity Outbred mouse studies identifies multiple longevity-associated loci.
Martin N Mullis, Kevin M Wright, Anil Raj, Daniel M Gatti, Peter C Reifsnyder

bioRxiv· December 2024

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B cells in perivascular and peribronchiolar granuloma-associated lymphoid tissue and B-cell signatures identify asymptomatic lung infection in Diversity Outbred mice.
Deniz Koyuncu, Thomas Tavolara, Daniel M Gatti, Adam C Gower, Melanie L Ginese

Infect Immun· July 2024

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Quantitative trait loci mapping provides insights into the genetic regulation of dendritic cell numbers in mouse tissues.
Thiago Y Oliveira, Julia Merkenschlager, Thomas Eisenreich, Juliana Bortolatto, Kai-Hui Yao, Daniel M Gatti

Cell Rep· June 2024

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Systems genetics uncover new loci containing functional gene candidates in Mycobacterium tuberculosis-infected Diversity Outbred mice.
Daniel M Gatti, Anna L Tyler, J Matthew Mahoney, Gary A Churchill, Bulent Yener

PLoS Pathog· June 2024

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Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models.
Beth L Dumont, Daniel M Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey

PLoS Genet· April 2024

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Unraveling the genetics of arsenic toxicity with cellular morphology QTL.
Callan O'Connor, Gregory R Keele, Whitney Martin, Timothy Stodola, Daniel Gatti

PLoS Genet· April 2024

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Multiple genetic loci influence vaccine-induced protection against Mycobacterium tuberculosis in genetically diverse mice.
Sherry L Kurtz, Richard E Baker, Frederick J Boehm, Chelsea C Lehman, Lara R Mittereder, Daniel M Gatti

PLoS Pathog· March 2024

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Cell morphology QTL reveal gene by environment interactions in a genetically diverse cell population.
Callan O'Connor, Gregory R Keele, Whitney Martin, Timothy Stodola, Daniel Gatti

bioRxiv· November 2023

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Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models.
Beth L Dumont, Daniel Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey

bioRxiv· September 2023

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Author Correction: Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut.
Qijun Zhang, Vanessa Linke, Katherine A Overmyer, Lindsay L Traeger, Kazuyuki Kasahara, Daniel M Gatti

Nat Microbiol· April 2023

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Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut.
Qijun Zhang, Vanessa Linke, Katherine A Overmyer, Lindsay L Traeger, Kazuyuki Kasahara, Daniel M Gatti

Nat Microbiol· March 2023

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QTLViewer: an interactive webtool for genetic analysis in the Collaborative Cross and Diversity Outbred mouse populations.
Matthew Vincent, Isabela Gerdes Gyuricza, Gregory R Keele, Daniel M Gatti, Mark P Keller

G3 (Bethesda)· July 2022

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Genome-wide association mapping of ethanol sensitivity in the Diversity Outbred mouse population.
Clarissa C Parker, Vivek M Philip, Daniel M Gatti, Steven Kasparek, Andrew M Kreuzman

Alcohol Clin Exp Res· June 2022

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Author Correction: Defining the consequences of genetic variation on a proteome-wide scale.
Joel M Chick, Steven C Munger, Petr Simecek, Edward L Huttlin, Kwangbom Choi, Daniel M Gatti

Nature· June 2022

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Uncovering Modifier Genes of X-Linked Alport Syndrome Using a Novel Multiparent Mouse Model.
Yuka Takemon, Valerie Wright, Bernard Davenport, Daniel M Gatti, Susan M Sheehan

J Am Soc Nephrol· August 2021

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CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice.
Deniz Koyuncu, Muhammad Khalid Khan Niazi, Thomas Tavolara, Claudia Abeijon, Melanie L Ginese, Daniel M Gatti

PLoS Pathog· August 2021

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Automatic discovery of clinically interpretable imaging biomarkers for Mycobacterium tuberculosis supersusceptibility using deep learning.
Thomas E Tavolara, M Khalid Khan Niazi, Melanie Ginese, Cesar Piedra-Mora, Daniel M Gatti

EBioMedicine· December 2020

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A large-scale genome-lipid association map guides lipid identification.
Vanessa Linke, Katherine A Overmyer, Ian J Miller, Dain R Brademan, Paul D Hutchins, Daniel M Gatti

Nat Metab· October 2020

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Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency.
Daniel A Skelly, Anne Czechanski, Candice Byers, Selcan Aydin, Catrina Spruce, Daniel M Gatti

Cell Stem Cell· September 2020

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Cross-Species Analyses Identify Dlgap2 as a Regulator of Age-Related Cognitive Decline and Alzheimer's Dementia.
Andrew R Ouellette, Sarah M Neuner, Logan Dumitrescu, Laura C Anderson, Daniel M Gatti

Cell Rep· September 2020

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Nine quick tips for efficient bioinformatics curriculum development and training.
Susan McClatchy, Kristin M Bass, Daniel M Gatti, Adam Moylan, Gary Churchill

PLoS Comput Biol· July 2020

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Nitrosative Stress and Lipid Homeostasis as a Mechanism for Zileuton Hepatotoxicity and Resistance in Genetically Sensitive Mice.
Dahea You, Lascelles E Lyn-Cook, Daniel M Gatti, Natalie Bell, Philip R Mayeux

Toxicol Sci· June 2020

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High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains.
Brendan T Keenan, Raymond J Galante, Jie Lian, Petr Simecek, Daniel M Gatti

Sleep· May 2020

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