Publications by authors named "Daniel Hebenstreit"

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Fast TV-PRO-seq: Accelerated and Streamlined Protocol for Timing RNA Polymerase Pausing.
Jie Zhang, Zhixian Liang, Mingxin Sun, Daniel Hebenstreit, Shaohui Zhang

Bio Protoc· July 2025

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Single-Calibration Cell Size Measurement With Flow Cytometry.
Philip Davies, Massimo Cavallaro, Daniel Hebenstreit

Cytometry A· April 2025

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Transcriptional bursting: from fundamentals to novel insights.
Daniel Hebenstreit, Pradip Karmakar

Biochem Soc Trans· August 2024

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N-terminal tagging of RNA Polymerase II shapes transcriptomes more than C-terminal alterations.
Adam Callan-Sidat, Emmanuel Zewdu, Massimo Cavallaro, Juntai Liu, Daniel Hebenstreit

iScience· June 2024

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Ceg1 depletion reveals mechanisms governing degradation of non-capped RNAs in Saccharomyces cerevisiae.
Onofrio Zanin, Matthew Eastham, Kinga Winczura, Mark Ashe, Rocio T Martinez-Nunez, Daniel Hebenstreit

Commun Biol· November 2023

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Bayesian inference of polymerase dynamics over the exclusion process.
Massimo Cavallaro, Yuexuan Wang, Daniel Hebenstreit, Ritabrata Dutta

R Soc Open Sci· August 2023

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Synergising single-cell resolution and 4sU labelling boosts inference of transcriptional bursting.
David M Edwards, Philip Davies, Daniel Hebenstreit

Genome Biol· June 2023

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Non-coding RNAs associated with Prader-Willi syndrome regulate transcription of neurodevelopmental genes in human induced pluripotent stem cells.
Monika Sledziowska, Kinga Winczura, Matt Jones, Ruba Almaghrabi, Hannah Mischo, Daniel Hebenstreit

Hum Mol Genet· January 2023

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CMTr cap-adjacent 2'-O-ribose mRNA methyltransferases are required for reward learning and mRNA localization to synapses.
Irmgard U Haussmann, Yanying Wu, Mohanakarthik P Nallasivan, Nathan Archer, Zsuzsanna Bodi, Daniel Hebenstreit

Nat Commun· March 2022

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Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe.
Sandip De, David M Edwards, Vibha Dwivedi, Jianming Wang, Wazeer Varsally, Daniel Hebenstreit

Nucleic Acids Res· January 2022

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Anti-bias training for (sc)RNA-seq: experimental and computational approaches to improve precision.
Philip Davies, Matt Jones, Juntai Liu, Daniel Hebenstreit

Brief Bioinform· November 2021

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Timing RNA polymerase pausing with TV-PRO-seq.
Jie Zhang, Massimo Cavallaro, Daniel Hebenstreit

Cell Rep Methods· October 2021

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Systemic and adipocyte transcriptional and metabolic dysregulation in idiopathic intracranial hypertension.
Connar Sj Westgate, Hannah F Botfield, Zerin Alimajstorovic, Andreas Yiangou, Mark Walsh, Daniel Hebenstreit

JCI Insight· May 2021

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RNA editing contributes to epitranscriptome diversity in chronic lymphocytic leukemia.
Franz J Gassner, Nadja Zaborsky, Ilana Buchumenski, Erez Y Levanon, Matthias Gatterbauer, Daniel Hebenstreit

Leukemia· April 2021

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3 -5 crosstalk contributes to transcriptional bursting.
Massimo Cavallaro, Mark D Walsh, Matt Jones, James Teahan, Simone Tiberi, Daniel Hebenstreit

Genome Biol· February 2021

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Evidence of slightly increased Pol II pausing in UPF1-depleted cells.
Anand K Singh, Jie Zhang, Daniel Hebenstreit, Saverio Brogna

MicroPubl Biol· October 2020

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Experience Recruits MSK1 to Expand the Dynamic Range of Synapses and Enhance Cognition.
Lucia Privitera, Lorenzo Morè, Daniel D Cooper, Philippa Richardson, Marianthi Tsogka, Daniel Hebenstreit

J Neurosci· June 2020

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Exome sequencing of the TCL1 mouse model for CLL reveals genetic heterogeneity and dynamics during disease development.
Nadja Zaborsky, Franz J Gassner, Jan P Höpner, Maria Schubert, Daniel Hebenstreit

Leukemia· April 2019

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The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci.
Anand K Singh, Subhendu Roy Choudhury, Sandip De, Jie Zhang, Stephen Kissane, Daniel Hebenstreit

Elife· March 2019

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LiBiNorm: an htseq-count analogue with improved normalisation of Smart-seq2 data and library preparation diagnostics.
Nigel P Dyer, Vahid Shahrezaei, Daniel Hebenstreit

PeerJ· February 2019

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Bayesian inference on stochastic gene transcription from flow cytometry data.
Simone Tiberi, Mark Walsh, Massimo Cavallaro, Daniel Hebenstreit, Bärbel Finkenstädt

Bioinformatics· September 2018

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Nicotinamide Nucleotide Transhydrogenase as a Novel Treatment Target in Adrenocortical Carcinoma.
Vasileios Chortis, Angela E Taylor, Craig L Doig, Mark D Walsh, Eirini Meimaridou, Daniel Hebenstreit

Endocrinology· August 2018

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Imprecision and DNA Break Repair Biased towards Incompatible End Joining in Leukemia.
Franz Josef Gassner, Maria Schubert, Stefan Rebhandl, Karina Spandl, Nadja Zaborsky, Daniel Hebenstreit

Mol Cancer Res· March 2018

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AKR1C3-Mediated Adipose Androgen Generation Drives Lipotoxicity in Women With Polycystic Ovary Syndrome.
Michael W O'Reilly, Punith Kempegowda, Mark Walsh, Angela E Taylor, Konstantinos N Manolopoulos, Daniel Hebenstreit

J Clin Endocrinol Metab· September 2017

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Modeling Enzyme Processivity Reveals that RNA-Seq Libraries Are Biased in Characteristic and Correctable Ways.
Nathan Archer, Mark D Walsh, Vahid Shahrezaei, Daniel Hebenstreit

Cell Syst· November 2016

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