Publications by authors named "Daniel Jeffares"

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A novel Leishmania infantum reference strain for gene editing and the study of visceral leishmaniasis.
Rokhaya Thiam, Maria Santana Ceballos, Tom Beneke, Nada Kuk, Grégoire Pasquier, Daniel C Jeffares

PLoS One· September 2025

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Molecular Insights into Cell-Mediated Immunity in Atypical Non-Ulcerated Cutaneous Leishmaniasis.
Luís Fábio S Batista, Carmen M Sandoval Pacheco, Gabriela V Araujo Flores, Frederico M Ferreira, André N A Gonçalves, Daniel C Jeffares

Microorganisms· February 2025

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Pseudomolecule-scale genome assemblies of Drepanocaryum sewerzowii and Marmoritis complanata.
Samuel J Smit, Caragh Whitehead, Sally R James, Daniel C Jeffares, Grant Godden

G3 (Bethesda)· October 2024

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Detecting complex infections in trypanosomatids using whole genome sequencing.
João Luís Reis-Cunha, Daniel Charlton Jeffares

BMC Genomics· October 2024

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Ancestral aneuploidy and stable chromosomal duplication resulting in differential genome structure and gene expression control in trypanosomatid parasites.
João L Reis-Cunha, Samuel A Pimenta-Carvalho, Laila V Almeida, Anderson Coqueiro-Dos-Santos, Catarina A Marques, Daniel C Jeffares

Genome Res· April 2024

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Long-term hematopoietic stem cells trigger quiescence in Leishmania parasites.
Laura Dirkx, Sara I Van Acker, Yasmine Nicolaes, João Luís Reis Cunha, Rokaya Ahmad, Daniel C Jeffares

PLoS Pathog· April 2024

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Co-infection of Leishmania infantum and a Crithidia-related species in a case of refractory relapsed visceral leishmaniasis with non-ulcerated cutaneous manifestation in Brazil.
Luana Aparecida Rogerio, Talita Yuri Takahashi, Luria Cardoso, Nayore Tamie Takamiya, Enaldo Vieira de Melo, Daniel C Jeffares

Int J Infect Dis· August 2023

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Selective whole-genome amplification reveals population genetics of Leishmania braziliensis directly from patient skin biopsies.
Olivia A Pilling, João L Reis-Cunha, Cooper A Grace, Alexander S F Berry, Matthew W Mitchell, Daniel C Jeffares

PLoS Pathog· March 2023

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Parasite Genotype Is a Major Predictor of Mortality from Visceral Leishmaniasis.
Cooper Alastair Grace, Kátia Silene Sousa Carvalho, Mayara Ingrid Sousa Lima, Vladimir Costa Silva, João Luís Reis-Cunha, Daniel C Jeffares

mBio· December 2022

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Identification of individual root-knot nematodes using low coverage long-read sequencing.
Graham S Sellers, Daniel C Jeffares, Bex Lawson, Tom Prior, David H Lunt

PLoS One· January 2022

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Variables Influencing Differences in Sequence Conservation in the Fission Yeast Schizosaccharomyces pombe.
Simon Emanuel Harnqvist, Cooper Alastair Grace, Daniel Charlton Jeffares

J Mol Evol· December 2021

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Candidates for Balancing Selection in Leishmania donovani Complex Parasites.
Cooper Alastair Grace, Sarah Forrester, Vladimir Costa Silva, Kátia Silene Sousa Carvalho, Hannah Kilford, Daniel C Jeffares

Genome Biol Evol· December 2021

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The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching.
Tobias Mourier, Denise Anete Madureira de Alvarenga, Abhinav Kaushik, Anielle de Pina-Costa, Olga Douvropoulou, Daniel C Jeffares

BMC Biol· October 2021

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R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements.
David A Ellis, Félix Reyes-Martín, María Rodríguez-López, Cristina Cotobal, Xi-Ming Sun, Daniel C Jeffares

PLoS Genet· August 2021

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Experimental Selection of Paromomycin Resistance in Amastigotes Induces Variable Genomic Polymorphisms.
Sarah Hendrickx, João Luís Reis-Cunha, Sarah Forrester, Daniel C Jeffares, Guy Caljon

Microorganisms· July 2021

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Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding.
Chen Cao, Jingni He, Lauren Mak, Deshan Perera, Devin Kwok, Daniel C Jeffares

Mol Biol Evol· May 2021

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Ancestral Admixture Is the Main Determinant of Global Biodiversity in Fission Yeast.
Sergio Tusso, Bart P S Nieuwenhuis, Fritz J Sedlazeck, John W Davey, Daniel C Jeffares

Mol Biol Evol· September 2019

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Fitness Landscape of the Fission Yeast Genome.
Leanne Grech, Daniel C Jeffares, Christoph Y Sadée, María Rodríguez-López, Danny A Bitton

Mol Biol Evol· August 2019

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Comparative structural and evolutionary analyses predict functional sites in the artemisinin resistance malaria protein K13.
Romain Coppée, Daniel C Jeffares, Maria A Miteva, Audrey Sabbagh, Jérôme Clain

Sci Rep· July 2019

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Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells.
David A Ellis, Ville Mustonen, María Rodríguez-López, Charalampos Rallis, Michał Malecki, Daniel C Jeffares

Genetics· October 2018

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A Leishmania infantum genetic marker associated with miltefosine treatment failure for visceral leishmaniasis.
Juliana B T Carnielli, Kathryn Crouch, Sarah Forrester, Vladimir Costa Silva, Sílvio F G Carvalho, Daniel C Jeffares

EBioMedicine· October 2018

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The natural diversity and ecology of fission yeast.
Daniel C Jeffares

Yeast· March 2018

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Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.
Daniel C Jeffares, Clemency Jolly, Mimoza Hoti, Doug Speed, Liam Shaw

Nat Commun· January 2017

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Spotsizer: High-throughput quantitative analysis of microbial growth.
Leanne Bischof, Martin Převorovský, Charalampos Rallis, Daniel C Jeffares, Yulia Arzhaeva

Biotechniques· October 2016

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Does the Ribosome Challenge our Understanding of the RNA World?
Anthony M Poole, Daniel C Jeffares, Marc P Hoeppner, David Penny

J Mol Evol· January 2016

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