Publications by authors named "Daniel Moakley"

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Primate-specific adaptation of Ku protects transcriptomic integrity by suppressing Alu-mediated alternative splicing.
Tianji Yu, Jimin Yoon, Yimeng Zhu, Angelina Li, Brian J Lee, Daniel F Moakley

bioRxiv· December 2025

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Exon inclusion signatures enable accurate estimation of splicing factor activity.
Miquel Anglada-Girotto, Carolina Segura-Morales, Daniel F Moakley, Chaolin Zhang, Samuel Miravet-Verde

bioRxiv· July 2025

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Ku limits RNA-induced innate immunity to allow Alu expansion in primates.
Yimeng Zhu, Angelina Li, Suvrajit Maji, Brian J Lee, Sophie M Korn, Daniel F Moakley

Nature· July 2025

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Reverse engineering neuron-type-specific and type-orthogonal splicing-regulatory networks using diverse cellular transcriptomes.
Daniel F Moakley, Melissa Campbell, Miquel Anglada-Girotto, Huijuan Feng, Andrea Califano

Cell Rep· July 2025

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Ku suppresses RNA-mediated innate immune responses in human cells to accommodate primate-specific Alu expansion.
Yimeng Zhu, Angelina Li, Suvrajit Maji, Brian J Lee, Sophie M Korn, Daniel F Moakley

bioRxiv· February 2025

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Oncogenic NOVA1 expression dysregulates alternative splicing in breast cancer.
Daniel F Moakley, Chaolin Zhang

bioRxiv· July 2024

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Reverse engineering neuron type-specific and type-orthogonal splicing-regulatory networks using single-cell transcriptomes.
Daniel F Moakley, Melissa Campbell, Miquel Anglada-Girotto, Huijuan Feng, Andrea Califano

bioRxiv· June 2024

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Complexity and graded regulation of neuronal cell-type-specific alternative splicing revealed by single-cell RNA sequencing.
Huijuan Feng, Daniel F Moakley, Shuonan Chen, Melissa G McKenzie, Vilas Menon

Proc Natl Acad Sci U S A· March 2021

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Pharmacological Profiling of Purified Human Stem Cell-Derived and Primary Mouse Motor Neurons.
Daniel Moakley, Joan Koh, Joao D Pereira, Daniel M DuBreuil, Anna-Claire Devlin

Sci Rep· July 2019

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The Splicing Code Goes Deep.
Suying Bao, Daniel F Moakley, Chaolin Zhang

Cell· January 2019

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Transcriptome and in Vitro Differentiation Profile of Human Embryonic Stem Cell Derived NKX2.1-Positive Neural Progenitors.
Christopher Y Chen, Alex Plocik, Nickesha C Anderson, Daniel Moakley, Trinithas Boyi

Stem Cell Rev Rep· December 2016

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