Publications by authors named "Daniel Muema"

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Data-optimal scaling of paired antibody language models.
Mahdi Shafiei Neyestanak, Sarah M Burbach, Karenna Ng, Praneeth Gangavarapu, Jonathan Hurtado, Daniel Muema

bioRxiv· November 2025

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Bayesian estimation of HIV acquisition dates for prevention trials.
Raabya Rossenkhan, Elena E Giorgi, Danica Shao, James Ludwig, Phillip Labuschagne, Daniel Muema

mBio· October 2025

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Vaccination with mRNA-encoded nanoparticles drives early maturation of HIV bnAb precursors in humans.
Jordan R Willis, Madhu Prabhakaran, Michelle Muthui, Ansuya Naidoo, Troy Sincomb, Daniel Muema

Science· July 2025

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Toward advances in retinoblastoma genetics in Kenya.
Helen Dimaras, Beatrice Omweri, Daniel Muema, Loice Kanda, Rosaline Wanjiru Macharia

Nat Genet· December 2024

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B cell heterogeneity in human tuberculosis highlights compartment-specific phenotype and functional roles.
Robert Krause, Paul Ogongo, Liku Tezera, Mohammed Ahmed, Ian Mbano, Daniel Muema

Commun Biol· May 2024

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Early antiretroviral therapy and its impact on natural killer cell dynamics in HIV-1 infected men who have sex with men: a cross-sectional pilot study evaluating the impact of early ART initiation on NK cell perturbation in HIV infection.
Matrona Akiso, Daniel Muema, Robert Langat, Kewreshini K Naidoo, Geoffrey Oino

Microbiol Spectr· April 2024

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Association Between Human Immunodeficiency Virus Viremia and Compromised Neutralization of Severe Acute Respiratory Syndrome Coronavirus 2 Beta Variant.
Shi-Hsia Hwa, Jumari Snyman, Mallory Bernstein, Yashica Ganga, Sandile Cele, Daniel Muema

J Infect Dis· January 2023

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HIV skews the SARS-CoV-2 B cell response towards an extrafollicular maturation pathway.
Robert Krause, Jumari Snyman, Hwa Shi-Hsia, Daniel Muema, Farina Karim

Elife· October 2022

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Similar Antibody Responses Against Severe Acute Respiratory Syndrome Coronavirus 2 in Individuals Living Without and With Human Immunodeficiency Virus on Antiretroviral Therapy During the First South African Infection Wave.
Jumari Snyman, Shi Hsia Hwa, Robert Krause, Daniel Muema, Tarylee Reddy

Clin Infect Dis· August 2022

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Low Immune Activation in Early Pregnancy Is Associated With Preterm But Not Small-for-gestational-age Delivery in Women Infected With Human Immunodeficiency Virus Initiating Antiretroviral Therapy in Pregnancy: A Prematurity Immunology in HIV-infected Mothers and their Infants Study (PIMS) Case-control Study in Cape Town, South Africa.
Nontlantla Mdletshe, Christina Thobakgale, Thokozile R Malaba, Hlengiwe Madlala, Landon Myer, Daniel M Muema

Clin Infect Dis· December 2021

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Coordinated Fc-effector and neutralization functions in HIV-infected children define a window of opportunity for HIV vaccination.
Eunice W Nduati, Mathew J Gorman, Yiakon Sein, Tandile Hermanus, Dansu Yuan, Daniel M Muema

AIDS· October 2021

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HIV status alters disease severity and immune cell responses in Beta variant SARS-CoV-2 infection wave.
Farina Karim, Inbal Gazy, Sandile Cele, Yenzekile Zungu, Robert Krause, Daniel Muema

Elife· October 2021

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Contrasting Inflammatory Signatures in Peripheral Blood and Bronchoalveolar Cells Reveal Compartment-Specific Effects of HIV Infection.
Daniel M Muema, Maphe Mthembu, Abigail E Schiff, Urisha Singh, Björn Corleis

Front Immunol· March 2021

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Envelope characteristics in individuals who developed neutralizing antibodies targeting different epitopes in HIV-1 subtype C infection.
Bongiwe Ndlovu, Kamini Gounder, Daniel Muema, Nagarajan Raju, Tandile Hermanus

Virology· July 2020

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Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection.
Samuel W Kazer, Toby P Aicher, Daniel M Muema, Shaina L Carroll, Jose Ordovas-Montanes

Nat Med· April 2020

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Association between the cytokine storm, immune cell dynamics, and viral replicative capacity in hyperacute HIV infection.
Daniel M Muema, Ngomu A Akilimali, Okechukwu C Ndumnego, Sipho S Rasehlo, Raveshni Durgiah

BMC Med· March 2020

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Augmentation of HIV-specific T cell function by immediate treatment of hyperacute HIV-1 infection.
Zaza M Ndhlovu, Samuel W Kazer, Thandeka Nkosi, Funsho Ogunshola, Daniel M Muema

Sci Transl Med· May 2019

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Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome Is Associated With Dysregulation of IL-7/IL-7 Receptor Signaling Pathway in T Cells and Monocyte Activation.
Ngomu Akeem Akilimali, Daniel M Muema, Charles Specht, Christina C Chang, Mahomed-Yunus S Moosa

J Acquir Immune Defic Syndr· April 2019

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Dual HLA B*42 and B*81-reactive T cell receptors recognize more diverse HIV-1 Gag escape variants.
Funsho Ogunshola, Gursev Anmole, Rachel L Miller, Emily Goering, Thandeka Nkosi, Daniel Muema

Nat Commun· November 2018

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Tuberculous meningitis is associated with higher cerebrospinal HIV-1 viral loads compared to other HIV-1-associated meningitides.
Ikanyeng D Seipone, Ravesh Singh, Vinod B Patel, Avashna Singh, Michelle L Gordon, Daniel M Muema

PLoS One· March 2018

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Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study.
Krista L Dong, Amber Moodley, Douglas S Kwon, Musie S Ghebremichael, Mary Dong, Daniel M Muema

Lancet HIV· January 2018

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Plasma But Not Cerebrospinal Fluid Interleukin 7 and Interleukin 5 Levels Pre-Antiretroviral Therapy Commencement Predict Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome.
Ngomu Akeem Akilimali, Christina C Chang, Daniel M Muema, Tarylee Reddy, Mahomed-Yunus S Moosa

Clin Infect Dis· October 2017

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Proportions of circulating follicular helper T cells are reduced and correlate with memory B cells in HIV-infected children.
Daniel M Muema, Gladys N Macharia, Babatunde A Olusola, Amin S Hassan, Greg W Fegan

PLoS One· September 2017

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Plasma CXCL13 but Not B Cell Frequencies in Acute HIV Infection Predicts Emergence of Cross-Neutralizing Antibodies.
Jenniffer M Mabuka, Anne-Sophie Dugast, Daniel M Muema, Tarylee Reddy, Yathisha Ramlakhan

Front Immunol· September 2017

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Cellular Architecture of Spinal Granulomas and the Immunological Response in Tuberculosis Patients Coinfected with HIV.
Debapriya Bhattacharya, Siva Danaviah, Daniel M Muema, Ngomu Akeem Akilimali, Prashini Moodley

Front Immunol· September 2017

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