Publications by authors named "Daniel Newburger"

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Read clouds uncover variation in complex regions of the human genome.
Alex Bishara, Yuling Liu, Ziming Weng, Dorna Kashef-Haghighi, Daniel E Newburger

Genome Res· October 2015

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Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia.
Ziming Weng, Noah Spies, Shirley X Zhu, Daniel E Newburger, Dorna Kashef-Haghighi

Genome Med· April 2015

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Inference of tumor phylogenies with improved somatic mutation discovery.
Raheleh Salari, Syed Shayon Saleh, Dorna Kashef-Haghighi, David Khavari, Daniel E Newburger

J Comput Biol· November 2013

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Genome evolution during progression to breast cancer.
Daniel E Newburger, Dorna Kashef-Haghighi, Ziming Weng, Raheleh Salari, Robert T Sweeney

Genome Res· July 2013

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A cross-sample statistical model for SNP detection in short-read sequencing data.
Omkar Muralidharan, Georges Natsoulis, John Bell, Daniel Newburger, Hua Xu

Nucleic Acids Res· January 2012

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The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome.
Daniel E Newburger, Georges Natsoulis, Sue Grimes, John M Bell, Ronald W Davis

Nucleic Acids Res· January 2012

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A flexible approach for highly multiplexed candidate gene targeted resequencing.
Georges Natsoulis, John M Bell, Hua Xu, Jason D Buenrostro, Heather Ordonez, Daniel Newburger

PLoS One· December 2011

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A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors.
Christian A Grove, Federico De Masi, M Inmaculada Barrasa, Daniel E Newburger, Mark J Alkema

Cell· July 2009

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Diversity and complexity in DNA recognition by transcription factors.
Gwenael Badis, Michael F Berger, Anthony A Philippakis, Shaheynoor Talukder, Andrew R Gehrke, Daniel E Newburger

Science· June 2009

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High-resolution DNA-binding specificity analysis of yeast transcription factors.
Cong Zhu, Kelsey J R P Byers, Rachel Patton McCord, Zhenwei Shi, Michael F Berger, Daniel E Newburger

Genome Res· April 2009

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UniPROBE: an online database of protein binding microarray data on protein-DNA interactions.
Daniel E Newburger, Martha L Bulyk

Nucleic Acids Res· January 2009

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Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.
Michael F Berger, Gwenael Badis, Andrew R Gehrke, Shaheynoor Talukder, Anthony A Philippakis, Daniel Newburger

Cell· June 2008

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The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.
Joel S Rozowsky, Daniel Newburger, Fred Sayward, Jiaqian Wu, Greg Jordan

Genome Res· June 2007

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Heterogeneity of nemaline myopathy cases with skeletal muscle alpha-actin gene mutations.
Pankaj B Agrawal, Corinne D Strickland, Charles Midgett, Ana Morales, Daniel E Newburger

Ann Neurol· July 2004

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