Publications by authors named "Daniel Sage"

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Revisiting PSF models: Unifying framework and high-performance implementation.
Yan Liu, Vasiliki Stergiopoulou, Jonathan Chuah, Eric Bezzam, Gert-Jan Both, Daniel Sage

J Microsc· November 2025

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Bridging the gap: Integrating cutting-edge techniques into biological imaging with deepImageJ.
Caterina Fuster-Barceló, Carlos García-López-de-Haro, Estibaliz Gómez-de-Mariscal, Wei Ouyang, Jean-Christophe Olivo-Marin, Daniel Sage

Biol Imaging· November 2024

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Surpassing light inhomogeneities in structured-illumination microscopy with FlexSIM.
Emmanuel Soubies, Alejandro Nogueron, Florence Pelletier, Thomas Mangeat, Christophe Leterrier, Daniel Sage

J Microsc· October 2024

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Machine learning in microscopy - insights, opportunities and challenges.
Inês Cunha, Emma Latron, Sebastian Bauer, Daniel Sage, Juliette Griffié

J Cell Sci· October 2024

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Back to the future - 20 years of progress and developments in photonic microscopy and biological imaging.
Marie Erard, Cyril Favard, Luke D Lavis, Gaëlle Recher, Hervé Rigneault, Daniel Sage

J Cell Sci· October 2024

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Quantification of Mycobacterium tuberculosis Growth in Cell-Based Infection Assays by Time-Lapse Fluorescence Microscopy.
Chiara Toniolo, Daniel Sage, John D McKinney, Neeraj Dhar

Methods Mol Biol· June 2024

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JDLL: a library to run deep learning models on Java bioimage informatics platforms.
Carlos García López de Haro, Stéphane Dallongeville, Thomas Musset, Estibaliz Gómez-de-Mariscal, Daniel Sage

Nat Methods· January 2024

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Prevalence of interpersonal violence against children in sport in six European countries.
Mike Hartill, Bettina Rulofs, Marc Allroggen, Stephanie Demarbaix, Rosa Diketmüller, Daniel Sage

Child Abuse Negl· December 2023

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Roadmap on Deep Learning for Microscopy.
Giovanni Volpe, Carolina Wählby, Lei Tian, Michael Hecht, Artur Yakimovich, Daniel Sage

ArXiv· March 2023

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A framework for evaluating the performance of SMLM cluster analysis algorithms.
Daniel J Nieves, Jeremy A Pike, Florian Levet, David J Williamson, Mohammed Baragilly, Daniel Sage

Nat Methods· February 2023

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Steer'n'Detect: fast 2D template detection with accurate orientation estimation.
Virginie Uhlmann, Zsuzsanna Püspöki, Adrien Depeursinge, Michael Unser, Daniel Sage

Bioinformatics· May 2022

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Correction of multiple-blinking artifacts in photoactivated localization microscopy.
Louis G Jensen, Tjun Yee Hoh, David J Williamson, Juliette Griffié, Daniel Sage

Nat Methods· May 2022

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DeepImageJ: A user-friendly environment to run deep learning models in ImageJ.
Estibaliz Gómez-de-Mariscal, Carlos García-López-de-Haro, Wei Ouyang, Laurène Donati, Emma Lundberg, Daniel Sage

Nat Methods· October 2021

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Deep Learning Enables Individual Xenograft Cell Classification in Histological Images by Analysis of Contextual Features.
Quentin Juppet, Fabio De Martino, Elodie Marcandalli, Martin Weigert, Olivier Burri, Daniel Sage

J Mammary Gland Biol Neoplasia· June 2021

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In pancreatic islets from type 2 diabetes patients, the dampened circadian oscillators lead to reduced insulin and glucagon exocytosis.
Volodymyr Petrenko, Nikhil R Gandasi, Daniel Sage, Anders Tengholm, Sebastian Barg

Proc Natl Acad Sci U S A· February 2020

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Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.
Daniel Sage, Thanh-An Pham, Hazen Babcock, Tomas Lukes, Thomas Pengo

Nat Methods· June 2019

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Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.
Daniel Sage, Thanh-An Pham, Hazen Babcock, Tomas Lukes, Thomas Pengo

Nat Methods· May 2019

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Investigating Focal Adhesion Substructures by Localization Microscopy.
Hendrik Deschout, Ilia Platzman, Daniel Sage, Lely Feletti, Joachim P Spatz

Biophys J· December 2017

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DeconvolutionLab2: An open-source software for deconvolution microscopy.
Daniel Sage, Lauréne Donati, Ferréol Soulez, Denis Fortun, Guillaume Schmit

Methods· February 2017

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Pancreatic α- and β-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression.
Volodymyr Petrenko, Camille Saini, Laurianne Giovannoni, Cedric Gobet, Daniel Sage

Genes Dev· February 2017

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Transforms and Operators for Directional Bioimage Analysis: A Survey.
Zsuzsanna Püspöki, Martin Storath, Daniel Sage, Michael Unser

Adv Anat Embryol Cell Biol· August 2016

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SpotCaliper: fast wavelet-based spot detection with accurate size estimation.
Zsuzsanna Püspöki, Daniel Sage, John Paul Ward, Michael Unser

Bioinformatics· April 2016

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Variational Phase Imaging Using the Transport-of-Intensity Equation.
Emrah Bostan, Emmanuel Froustey, Masih Nilchian, Daniel Sage, Michael Unser

IEEE Trans Image Process· February 2016

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Quantitative evaluation of software packages for single-molecule localization microscopy.
Daniel Sage, Hagai Kirshner, Thomas Pengo, Nico Stuurman, Junhong Min

Nat Methods· August 2015

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Understanding and enhancing future infrastructure resiliency: a socio-ecological approach.
Daniel Sage, Indraneel Sircar, Andrew Dainty, Pete Fussey, Chris Goodier

Disasters· July 2015

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