Publications by authors named "Daniel Volke"

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Growth-coupled microbial biosynthesis of the animal pigment xanthommatin.
Leah B Bushin, Tobias B Alter, María V G Alván-Vargas, Lara Dürr, Elina C Olson, Daniel C Volke

Nat Biotechnol· November 2025

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Mutations in the circadian cycle drive adaptive plasticity in cyanobacteria.
Alfonso Mendaña, María Santos-Merino, Raquel Gutiérrez-Lanza, Marina Domínguez-Quintero, Juan Manuel Medina-Méndez, Daniel C Volke

Proc Natl Acad Sci U S A· September 2025

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Genetic Dissection of Cyclic di-GMP Signalling in Pseudomonas aeruginosa via Systematic Diguanylate Cyclase Disruption.
Román A Martino, Daniel C Volke, Albano H Tenaglia, Paula M Tribelli, Pablo I Nikel

Microb Biotechnol· April 2025

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Release of extracellular DNA by sp. as a major determinant for biofilm switching and an early indicator for cell population control.
Fatemeh Bajoul Kakahi, Juan Andres Martinez, Fabian Moreno Avitia, Daniel C Volke, Nicolas T Wirth

iScience· March 2025

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Engineering a phi15-based expression system for stringent gene expression in Pseudomonas putida.
Eveline-Marie Lammens, Daniel C Volke, Alison Kerremans, Yannick Aerts, Maarten Boon

Commun Biol· February 2025

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Seven critical challenges in synthetic one-carbon assimilation and their potential solutions.
Òscar Puiggené, Giusi Favoino, Filippo Federici, Michele Partipilo, Enrico Orsi, Daniel C Volke

FEMS Microbiol Rev· January 2025

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Harnessing noncanonical redox cofactors to advance synthetic assimilation of one-carbon feedstocks.
Enrico Orsi, Javier M Hernández-Sancho, Maaike S Remeijer, Aleksander J Kruis, Daniel C Volke

Curr Opin Biotechnol· December 2024

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Accelerating enzyme discovery and engineering with high-throughput screening.
Eray U Bozkurt, Emil C Ørsted, Daniel C Volke, Pablo I Nikel

Nat Prod Rep· October 2024

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A versatile microbial platform as a tunable whole-cell chemical sensor.
Javier M Hernández-Sancho, Arnaud Boudigou, Maria V G Alván-Vargas, Dekel Freund, Jenny Arnling Bååth, Daniel C Volke

Nat Commun· September 2024

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Engineering the carbon and redox metabolism of Paenibacillus polymyxa for efficient isobutanol production.
Meliawati Meliawati, Daniel C Volke, Pablo I Nikel, Jochen Schmid

Microb Biotechnol· March 2024

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A SEVA-based, CRISPR-Cas3-assisted genome engineering approach for with efficient vector curing.
Eveline-Marie Lammens, Daniel Christophe Volke, Kaat Schroven, Marleen Voet, Alison Kerremans

Microbiol Spectr· December 2023

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Emergent CRISPR-Cas-based technologies for engineering non-model bacteria.
Daniel C Volke, Enrico Orsi, Pablo I Nikel

Curr Opin Microbiol· October 2023

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Time-resolved, deuterium-based fluxomics uncovers the hierarchy and dynamics of sugar processing by Pseudomonas putida.
Daniel C Volke, Nicolas Gurdo, Riccardo Milanesi, Pablo I Nikel

Metab Eng· September 2023

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Automating the design-build-test-learn cycle towards next-generation bacterial cell factories.
Nicolás Gurdo, Daniel C Volke, Douglas McCloskey, Pablo Iván Nikel

N Biotechnol· May 2023

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Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model.
Dalimil Bujdoš, Barbora Popelářová, Daniel C Volke, Pablo I Nikel, Nikolaus Sonnenschein

Metab Eng· January 2023

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SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes.
Esteban Martínez-García, Sofía Fraile, Elena Algar, Tomás Aparicio, Elena Velázquez, Daniel C Volke

Nucleic Acids Res· January 2023

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Engineering cell morphology by CRISPR interference in Acinetobacter baylyi ADP1.
Jin Luo, Elena Efimova, Daniel Christoph Volke, Ville Santala, Suvi Santala

Microb Biotechnol· November 2022

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Merging automation and fundamental discovery into the design-build-test-learn cycle of nontraditional microbes.
Nicolás Gurdo, Daniel C Volke, Pablo I Nikel

Trends Biotechnol· October 2022

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A Nonconventional Archaeal Fluorinase Identified by In Silico Mining for Enhanced Fluorine Biocatalysis.
Isabel Pardo, David Bednar, Patricia Calero, Daniel C Volke, Jiří Damborský

ACS Catal· June 2022

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Modular (de)construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing.
Daniel C Volke, Román A Martino, Ekaterina Kozaeva, Andrea M Smania, Pablo I Nikel

Nat Commun· May 2022

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Model-guided dynamic control of essential metabolic nodes boosts acetyl-coenzyme A-dependent bioproduction in rewired Pseudomonas putida.
Ekaterina Kozaeva, Svetlana Volkova, Marta R A Matos, Mariela P Mezzina, Tune Wulff, Daniel C Volke

Metab Eng· September 2021

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Impact of nicotine pathway downregulation on polyamine biosynthesis and leaf ripening in tobacco.
Greta Nölke, Ivana Chudobova, Marcel Houdelet, Daniel Volke, Marcos Lusso

Plant Direct· May 2021

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biofilms for continuous conversion of cyclohexanone in drip flow and rotating bed reactors.
Ingeborg Heuschkel, Selina Hanisch, Daniel C Volke, Erik Löfgren, Anna Hoschek

Eng Life Sci· March 2021

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Cofactor Specificity of Glucose-6-Phosphate Dehydrogenase Isozymes in Pseudomonas putida Reveals a General Principle Underlying Glycolytic Strategies in Bacteria.
Daniel Christoph Volke, Karel Olavarría, Pablo Iván Nikel

mSystems· March 2021

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Rapid Genome Engineering of Assisted by Fluorescent Markers and Tractable Curing of Plasmids.
Daniel C Volke, Nicolas T Wirth, Pablo I Nikel

Bio Protoc· February 2021

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