Publications by authors named "Daniela Q James"

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Optimized ChIP-exo for mammalian cells and patterned sequencing flow cells.
Daniela Q James, Sohini Mukherjee, C Caiden Cannon, Shaun Mahony

G3 (Bethesda)· November 2025

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Optimized ChIP-exo for mammalian cells and patterned sequencing flow cells.
Daniela Q James, Sohini Mukherjee, C Caiden Cannon, Shaun Mahony

bioRxiv· August 2025

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Accurate allocation of multimapped reads enables regulatory element analysis at repeats.
Alexis Morrissey, Jeffrey Shi, Daniela Q James, Shaun Mahony

Genome Res· July 2024

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Joint sequence & chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin.
Sonny Arora, Jianyu Yang, Tomohiko Akiyama, Daniela Q James, Alexis Morrissey

bioRxiv· October 2023

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Allo: Accurate allocation of multi-mapped reads enables regulatory element analysis at repeats.
Alexis Morrissey, Jeffrey Shi, Daniela Q James, Shaun Mahony

bioRxiv· September 2023

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